Transcript

Sequence

>Osa11LNT0105500.1

TGGAGAGTTCACATTGGCCAAAATAAAAACAAACAGATGAAGAGATCTCAATTTGCCTCCATGACCGCTACCTCCAAGCTTCGCTAGGGGAGGGAGAGAGAGAGAGGGATGAGAAGCCATGCATCCACCTGATGATGATCAGCCTCTCCCTCTGCTTTGATTTGCAAGGGTTTGCTGGGATATAAGGTGAAGCTATCTGAGGCAATTACTGCAAAAGAGACTGTGCAAGAAGCTGTGTGGTAGTGAATGCAGGCATCATCACCCCACTTCACACTTTTTGGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.02514

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0105500.1	11	22449660	A	G
Osa11LNT0105500.1	11	22449895	A	G
Osa11LNT0105500.1	11	22449990	A	G
Osa11LNT0105500.1	11	22449997	T	G
Osa11LNT0105500.1	11	22450111	G	A
Osa11LNT0105500.1	11	22450114	A	G
Osa11LNT0105500.1	11	22450195	C	T
Osa11LNT0105500.1	11	22450208	A	G
Osa11LNT0105500.1	11	22450209	A	T
Osa11LNT0105500.1	11	22450213	A	G
Osa11LNT0105500.1	11	22450272	C	G
Osa11LNT0105500.1	11	22450286	T	A
Osa11LNT0105500.1	11	22450310	A	G
Osa11LNT0105500.1	11	22450396	A	T
Osa11LNT0105500.1	11	22450410	A	G
Osa11LNT0105500.1	11	22450472	T	C
Osa11LNT0105500.1	11	22450487	T	C
Osa11LNT0105500.1	11	22450506	T	C
Osa11LNT0105500.1	11	22450511	A	C
Osa11LNT0105500.1	11	22450543	T	C
Osa11LNT0105500.1	11	22450586	T	C
Osa11LNT0105500.1	11	22450675	T	C
Osa11LNT0105500.1	11	22450699	C	T
Osa11LNT0105500.1	11	22450747	T	C
Osa11LNT0105500.1	11	22450852	G	A
Osa11LNT0105500.1	11	22450971	G	A
Osa11LNT0105500.1	11	22450980	A	G
Osa11LNT0105500.1	11	22451042	C	A
Osa11LNT0105500.1	11	22450197	T	C
Osa11LNT0105500.1	11	22450632	C	T
Osa11LNT0105500.1	11	22450429	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0105500.1	osa-miR5506	Cleavage	5.0	19.699	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0105500.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105500.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105500.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0105500.1	11	Xa21	Resistance or Tolerance	Bacterial blight resistance	CDO534	RZ537
Osa11LNT0105500.1	11	chs	Others	Others	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus