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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0106000.1

TTAAAAATTGCGAAAATAACTCTCGACTTCACTATTTACAACATGTGCAATGTACAGGCTACAAATCAATGGCTTTCATCCCAGGCAAAATCAAAATTAACCAAGAATTTATTTTCTTTTTTTACAGCAAAGAATTCCTAGACAGCCTAACATTACAGATGCAACGAGCTGTTATATATGGAACACCAACATCCACCAAATCACCAACAGATCGATCGGTGAGAGATGGCAGAAATACGAGGGAGAAATTAAACATGTATGAGCACTAAGTTTTTTCTTGAATTGCCTTCTTGCATTTGAATTTTTTTTTTCTGCCAATGCCCTTCATCCAGCAATGCAACAGAACAGGTAGCCCAGCTTGCTCCTCTCCTTGGGAGCTGCAGCACGGTCGTGCCGGAGCGGCCGGCGGAGGTCGGCGCCGCCGTCGCTGCTGTGTCGGCGGTGGCGGTGGCGGCGGCGGCGGCGATCACGGCCGTCGACGACGACGCCGGCGGCCGACGATGAGCGCCGCTCCGTCTCGCCGCCGACCTCTACGCCGCCGGCGGCGGTGGAGGACCAGGTGGTGAGGGGCCCACCCTCCTTGCGCTGCATGCGGACGGCGCGGATCTTGGAGAAGTCGAGGGAGTAGTCCGGCAGCACGCCGGCGGCCTTCATCTCGTCCCACTCGCCGAACGCCGGCACCCTCGCCCGCCGCTGCTCCTCCTCCTGCTGCTCGTTTCTGTTGCCCATGGCGATCGATCGATCGATTGATTCGTAGCTCAAGAAAACTTTGCTTTCTTGATGTGGACGAGATAGTTGTCGATCGATCGATCGAGATCAGACAACTAGAGGATTCAGAGCTAGCTAGCTAGCTAGTGATGCAGGTTTTGCACAGCAGGATGAGTTCTAGCTATAAGAACGTACGCTGATGAACGCGTATATATATCTATCTATCTGACGAATTAATTGATTAACTGGCTGGGATTAGCAACGAAGGACGAAGCTAGCAGAAACTTGAAGGCCACGATGTG

Coding Potentia
Explanation CPC Score
noncoding -1.03081
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0106000.1 11 23225502 T A
Osa11LNT0106000.1 11 23225244 T C
Osa11LNT0106000.1 11 23225684 A G
Osa11LNT0106000.1 11 23225767 T A
Osa11LNT0106000.1 11 23226290 C G
Osa11LNT0106000.1 11 23226396 A C
Osa11LNT0106000.1 11 23226506 T C
Osa11LNT0106000.1 11 23225314 G C
Osa11LNT0106000.1 11 23226653 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0106000.1 osa-miR1861c Cleavage 3.0 20.32 1 22
Osa11LNT0106000.1 osa-miR1861e Cleavage 3.5 20.32 1 22
Osa11LNT0106000.1 osa-miR1861k Cleavage 3.5 20.32 1 22
Osa11LNT0106000.1 osa-miR1861m Cleavage 3.5 20.32 1 22
Osa11LNT0106000.1 osa-miR1861n Cleavage 4.5 20.32 1 22
Osa11LNT0106000.1 osa-miR2275d Cleavage 5.0 21.229 1 22
Osa11LNT0106000.1 osa-miR396f-3p Cleavage 4.5 12.717 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0106000.1 11 Xa21 Resistance or Tolerance Bacterial blight resistance CDO534 RZ537
Osa11LNT0106000.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0106000.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0106000.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus