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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0106400.1

AAAAAAAGGGATCGAGAGATCGATCCTGTAGCCCTAGCCGCCAGGCTCCTGCGCCCTGCCGCTCCTGCCGCGTTTCTACCACCACCGGCGCCGTCTCTACGCCGCCGCCGTTGGTGCAGTGTCGCCGGTCGCCACCACCACCGTCGCCGCTGTGCTGCTGCTCCGTTTTCTGCTGCTGTTCGGTGGATTGATTTGCAGAGCAGCAGTAGCCAACAACTAGGGGGCAGGGCAGGAAGAGCAGAGAAGTCAAGGAATTGGGAGGAAGAGAGGCAAGGTACCTAATGACATCGATCAACATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAACTGAAATTTAGTTTTAGATTATACTTTGCTCAGCATAAGTTTTGCATAGAAGTTGTAAGGGTCATTAAGGTTCTGATTCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGGTATTGACTTTTCTTATAACTGCCTGTCGTGGATGTCCATATTTTTAGGGGAGACTGGCGAAATTTCTAATAATTTTAGGATTAGTTTTTGAGTGTATTTTGGTATGGCATTCTAGGTACGTGGTTACTGGGGGTGTTACAGCGTCAACCAAGAATCATGCCATGATGTGATTTCAGTTCCATTTTAATCTTCTAATTACCTGCCATGATTTTAGGTGACTGATATCTGGTTCCCTTCTCTAGTTCTCTTGTTCTGCAGCTGCTCCTCTGGATTCTGATTCAAGGATTCTCCCGATGGAACTCTAATTTCTCCTCTTTAAACTCGGGCACCTCCAGATTGATTTGTACTATGGCATACTAATCCTGGAACTAAAACTCCTTTCTTTACTTGAAACTCAGGTACTTCTTCTTGGCTCTTGCTCTACTGGTACTGCTTCCTGCCATCTTTCTTGATCTGCTGACTGCTACTGCTATGGTTAATTGATGTATTGATTTGTGCTGGATTTCACTGAGCTACTACAGCTGTTGTTGCTCTTCTAAGCGGAGCCATACTACTCTACTACTGTTGCAACTGCTGCTAATGCTGTTCCTCGAGGTTGTCTCCCAGCCAAAACAACATGATGGCTAGTCTACTAGCTAGGCTAATATTTGTATGTAATTTGTGAGGGCATGGTGATGCAGCTGCTTGCATGTCGGTTTGGAAAAGGATTTGCTGCCACATTTTTCACCTAATCAATTTGGGGTGAAAAAGGAAATTGGTTTTATACGTATACCTATGGAATTCTTACATTCTAGTCCTTAAGGTTTCATAATATTTAAGATTTTACTAGAGCTCGAGGGCTGATTGGTAATTGCTCTAGTTTTATTTTCATTTTCACAATTCCTCTATTGATTTGTATATAATAGCTATGAGTTGAGTATGTTACAGAACATTTGCAAAGCATAATATGGATGTATGCATGCATGCATGTATGCAGATATACACTGATCA

Coding Potentia
Explanation CPC Score
noncoding -1.08111
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0106400.1 11 23661803 G A
Osa11LNT0106400.1 11 23662360 A G
Osa11LNT0106400.1 11 23662401 T C
Osa11LNT0106400.1 11 23662558 G A
Osa11LNT0106400.1 11 23662680 A G
Osa11LNT0106400.1 11 23662689 T G
Osa11LNT0106400.1 11 23662927 C A
Osa11LNT0106400.1 11 23662961 T C
Osa11LNT0106400.1 11 23663020 A T
Osa11LNT0106400.1 11 23663091 G A
Osa11LNT0106400.1 11 23663100 T C
Osa11LNT0106400.1 11 23663103 A G
Osa11LNT0106400.1 11 23663110 T A
Osa11LNT0106400.1 11 23663196 A G
Osa11LNT0106400.1 11 23663232 A G
Osa11LNT0106400.1 11 23663334 C T
Osa11LNT0106400.1 11 23663335 A G
Osa11LNT0106400.1 11 23663422 A G
Osa11LNT0106400.1 11 23663401 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0106400.1 osa-miR5810 Translation 5.0 21.456 1 24
Osa11LNT0106400.1 osa-miR396c-3p Cleavage 4.5 11.643 1 21
Osa11LNT0106400.1 osa-miR172a Cleavage 4.5 21.662 1 21
Osa11LNT0106400.1 osa-miR172d-3p Cleavage 4.5 21.662 1 21
Osa11LNT0106400.1 osa-miR444a-5p Translation 5.0 17.332 1 21
Osa11LNT0106400.1 osa-miR444a-5p Translation 5.0 12.734 1 21
Osa11LNT0106400.1 osa-miR1426 Cleavage 3.5 21.662 1 21
Osa11LNT0106400.1 osa-miR1426 Translation 5.0 16.402 1 21
Osa11LNT0106400.1 osa-miR1432-5p Cleavage 5.0 10.93 1 21
Osa11LNT0106400.1 osa-miR1320-5p Cleavage 4.5 11.249 1 21
Osa11LNT0106400.1 osa-miR1863b Translation 4.5 17.898 1 24
Osa11LNT0106400.1 osa-miR5159 Translation 5.0 17.126 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus