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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0106500.1

CCTTTTTTTTGTTTCTAACTCAACTATCCATTATCAACTAATGGATATCCAACAAAAAAGAGGGAGTACATACACCTGGGTGTACAAAACAGTCGTCCTATAAATATTGGCTTATCTGGATACATATGGTTATTCAACAACCAAGCCTACTCAGCTGCATACATGGACATCATCATATAGGTGGTTGATAGCTACAGATAGATAGTCGACAGTTAATTAAGTAAACTAACAGTAGATCACTAAGCTAAGTGATAAAACGTCACCCTACATGCTCAGTTGGAGGCAAGGTTAAATCCCTCATCAATAATTAGATCGGTCATCTCGGCGTCATCCAGAAAGATACCCTCAGCTTTGGAGACGGCGACTCTCATCTCCAGGTTGTTGTCGACGACGGCGTAGCCGCCCTTGCCATGGCGGACGCGCCGTATGATCGCCTGGCACTCCGCGAGCTTGTCCTCGCGCTTCTTGTTGTACCTGTCCATCTCCCGCACGCTCTTCCTGAGCAACTTCTCCGCCTCCGACGGGTTCGGGTCGCCGCCGCCGCCGCCGTCCTTGAGGAGGTCGGCGACGTGGGGCAGCTCCCTCCGCTCCAGGGAGAGGATCTTGTCGACCAGCTTCTTCGACAGCGCGAGCTTCCCGCGCGGGACCAGGATCGCCTCCTCGCCGTCGACCGGCACCAGCGTACCGCCGCTTCGCTTTGAGCCTCTCGCCGCCATAGCTTTGTCGGCGGCGAACTGCTCCACGCAATGGGCGGCGGTGCAGGGCATCAACGCGATCTTCTCGCCGGCATCCTCCGCCGCCGCCGCCGCCAGCGCGACGACGCAACGCTTGAGGTAAGCCCGCCTGTCGGCCATCGGTGGATGGATGATTTCGCGGGAAATCTCGATGATTTTGCAGCTAAAAATTGGGGAATTCGAAACCCTAACGATTCGAGGATGTGTGGGGGGAAGACGAAGGGTGTGGTTTATCAAGGCGGAGGCGGATCCTGGCCGTCCGTTTCCAAAGCCGAATCCTTCTTTCTCTGCTAGTTTCATCGCGGCCGTCCGTCTCCGAAGTCGAATCCCTCCTCGGAACGGGCCAGATGAGGCAGCCCCTACGTGAGATTATGTGGGCTGCAAACTGGGCCAGGCCCAATAGGGGAACCAGCAACGAAAAGCGAAGGAACTCGTCACAGTCGTCTCTTCTACTACTACTACTATTTTGGAGAAGTTGGGATGGTTTTCCCAAATTTTCTTTTGCTTTTTCGATCTAAACTATCGATGTGTTTATTTGAACTAGCAAAATACATGTATGTTGTTACGGAATTAAAAATGACATCAGCATGATGTAGAGATGAAATCTATTTTAAATTTTAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.913713
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0106500.1 11 23930904 A C
Osa11LNT0106500.1 11 23931115 A G
Osa11LNT0106500.1 11 23931174 T G
Osa11LNT0106500.1 11 23931532 T C
Osa11LNT0106500.1 11 23931662 A G
Osa11LNT0106500.1 11 23931821 T C
Osa11LNT0106500.1 11 23931847 A T
Osa11LNT0106500.1 11 23931923 G A
Osa11LNT0106500.1 11 23932051 G A
Osa11LNT0106500.1 11 23932017 C T
Osa11LNT0106500.1 11 23932020 G A
Osa11LNT0106500.1 11 23930948 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0106500.1 osa-miR818f Cleavage 5.0 15.973 1 21
Osa11LNT0106500.1 osa-miR319a-5p Cleavage 5.0 14.241 1 21
Osa11LNT0106500.1 osa-miR820a Translation 5.0 21.16 1 21
Osa11LNT0106500.1 osa-miR820b Translation 5.0 21.16 1 21
Osa11LNT0106500.1 osa-miR820c Translation 5.0 21.16 1 21
Osa11LNT0106500.1 osa-miR5508 Cleavage 5.0 11.932 1 21
Osa11LNT0106500.1 osa-miR396e-3p Translation 4.5 16.1 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus