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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0106700.1

GATACATCTGTCTGAATCTGAATCTTGCAGTCATCAATGTCCATGAAAGTCCGAAAGATTCCCTGAATAACTTTTTCACCGGGCATTCCCTGAATAACTTCCTCAATGGCGGATGGTACATGTTTTGTTGGATGTAACAGAGTGGAAATTCCAAAGTTTCTGAGCTTGCATATATTATCTGCAGTGAAGTGGACGTTTCTTGGTTTAAGGTCACCGTGAATGATTGGCTTGTGATTATTTCTGTGGAGGTAATCGAGAGCTGAGCATATGCTGGCTGCTGTTGTAACCCTGTCTCTCCAAGTAAAAGATTTCTTTCCTCTAAACGTAAAAGATTTCTTGATGTCAGTGAGGCGATCTTCCAGTGTGTCAGGTAAAAGCTCGTAGACAAGTGCACGCCTTGGTGAGCATGCTCCTACAAGGTTTGCCAGGTTCTTGTGCTGGATGCTTCTGAAGATTTCAAGCTGGATTGCGGACCAATGACATTTTTTTGGTAGCCCCCTTGCTGAATTGACGGCCTTGGTCTTACAACCGGCTTAGCAATGGCTGGTTTTGGTGGCTTTTGAGTTTTGAAGGTAACAGGTTTCCTGTAAGTTCCTCCAGGGAGCCATGATGATGGTCTTACAGTTGGCTGAACAACTGCTTGTTTTTGGTGGCTCCTAACACCAGTGCTCTTTTGGTAGCCTCCTCCATGAATCGTGGTAGTAGTTCTTCTTGCTGGCTGAGGAGCTGGATTTTGGTGGCCTACTCCTCTGTAGAGCCCAGCCGGCTGCAGTCTGCCTCTCTGTTGCATTGCTGCCATTGCTAGGCAACAGGTTTTCAACTCCCAACCGCTTGATTTCTGTAGGTTTTCAGATGAAGCAGCTGACACTGTCTCTTACCTCAGCTGCTGATGAAAGCCTGCAACTCTGCAAGCAATATGGTGTTCACTCTGCCTGTGACTGACTGTCAGCTGAGGAATGCATGCTGATACTGCAGCCGACCGGCCATCGGTTTTATAGCACTCCGGCGGCAGGTTGGCCGTGATAAACATCCAGGCTTGACCGGAGAGGAGGACGACGAAGCAGGTCTTTTCCGTTTGCTCTGCAGTTTGGTCTACAATGGTAGATGGCATGGAAATTGGCATTCTTCAGGTTGTACAGTAATTGGTCAATGCTACCTGCCGTGTGTTTCAGTGGTAAGCTACAGAACAGGTTGGTGGATGGAAGGTGTAACACTTTGTGAGGAAACACTTGTGATTAATTTGCTCCTCATATGATCAAATTGATCATTGTCTAGGTCTTTTGGCTAGTATAAAGGTGGTGATAAACGAGCAAGATGGTTTGGATATATTGGAGCCATTGTCTGCTAGTAATAGACATTACATTGTCCCTAGTATCGACTTGCTGCTGTCCTATTATTGGAGTCTCATATTCAAACTAGCTATATGATTAGAACTTAGAAGCATTAAGACTAACATTTCCAGACCTGTAATACTGTCTCATTTTATTAATGGAAATGGGGGGAGCAATGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.887257
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0106700.1 11 24073387 T C
Osa11LNT0106700.1 11 24073401 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0106700.1 osa-miR5534a Translation 4.5 23.366 1 21
Osa11LNT0106700.1 osa-miR6251 Translation 4.5 21.393 1 21
Osa11LNT0106700.1 osa-miR3980a-3p Cleavage 4.0 23.231 1 21
Osa11LNT0106700.1 osa-miR3980b-3p Cleavage 4.0 23.231 1 21
Osa11LNT0106700.1 osa-miR160f-3p Cleavage 3.5 19.079 1 21
Osa11LNT0106700.1 osa-miR1426 Cleavage 5.0 18.303 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus