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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0106800.1

GGCGCTCTAAAAAGTGCATAACACATAATATTGCATCAAGAGCATTCCCCTGTTACAATCACAACACAGAAAACATTCACACAAGAAACAAATACTAGTGTTCAAATGTCATGATGAGATGCAAATTTTACCGACAAAACTGAAACCATGAGGGGAGCAGAGCATCAGCCATCAGCAATTCAGGTTTCAGGACATACCAGAAGTAGGACTAGCCTCTACATGAATTTCTGAAGATCGAGCAGCAGGTGGACTAGAGCTGACTGTGTCCTGAACATGGGTAGACACATCACTGCTCTGATTAGATGGTCCAGGAGTGCTGTTCCTGAAATTTGCACTCTTCTGCTGTTGCCATAATTTGCTCTTCTCGATGCCACAGTGGCAAAACAAAGCCCAGATGACGGTTACGAACTCGACACCGGATTTGAGGTCCTCGGCAAGAGCTGCTGCGTCAGAACTGGGAGCAATGTGCACAAGCAAGTGAACCCACACATCAGATAGGATCTCCCAACGACATTTTTGGTCCTCCTTCTTGATGAGTTCATTAGCCAGTATAGCACCTTGTTGCAATATGTTTCCACTCAGATTTAGACCATGCGTACCTTGAACAAGAGCTTTCTGCGCCTCTTTCATAAGCTTGTTGTATATGCTCTGCCAGGAGTGACAATCACTGAGCATTTCATGAGCACACTGAACAGCATCTTGAAAGGCCTTCTTGGACATCAAAATGGTTTCTGGGAGCAGTTTGGGCTTTGAAGCCAGCAGGTACATACAGTACCATGATAAGCAATTTGACACTGTGTATGCCTTTTGAAGCTCACCTGTAAGAGCTTTTTCATCCACCAGAAACGATGATAATCTTGACATTGTTGTTAAGTTGATTTTATGGTCATTGGCAAGCTTGATCTCACATAGGCTTGTTGCGATGTGCCAGACCAGAATAACACGGGAGCATGTTGGTACCTCTGCAAGGCATGCCAACCAATAACGCTCTGCTCTGTCACTGACACGAGACAAAGGGAGGTCTCTTGACAAAAGATGACCCTCGAGATCCATGGAGCGGAGTGCTTGAATTACTGCTGCCTTCACATTCTTGGCCATACTGTCATTCATTTTTCCTTCTGACCAAACCATTCTTGCATTTTGATTTCTTTCTAAAATACAAGAGAATATTTTCCACCCCGAGATGCTTGAGCTGAACGTTTGCAGGAAGGCATGCTGGTGTATAACTATAGTTCTTTCCCCATATCTGGCAGGTGTATTCACAATGACATATTTCAGCCATCTGTTTCTGAAATTCACAAAGTTGCACATGGCTATTAGTTTTGCCCACCTTGATAGGAAGTACCCGAGCATCCTAAAAATCTCATCAATCATTACTATGTACATGGCTGCTGCAGTGATACCTGAATCGTAACCAAATGAGTGCAGCGAATAACTAAAACGGGCCCGAGGGCCTGTCTCGTACTGATTTTGGGACATGCACCATATTGACATCTACAAAAAGCCATGTAGCCATGAAAAACTTCACCAAAGACAGCAGAAGAGTGAAGAAGAGCGAAAGAAGCCCTCTGCAGAAGACCATAGGATAACTGGAGTGGAGGGAATCCCGGAGGAACCTGACATCCAGCTCCAGGATACCGAACAGTACCTTGTCAGCACTATCTGAGAGGATCATCTTGCTGATTAGCTTTCGGGTCATGGAAACAGTAGCTTCATGCAACGTTGCTCCTTCCAGCCTACACCGGAGCAACCGAGATAATGCAAATGCCAGGGCCATGTCCTTCATGTTGTTCCCCTGCATGTTGATGGAGGTTAGCAGCAAGGCACTATCACATCGCCAAATCTTGTCCAAGGTAACTAGGGACTTCAAGTCTTCAACTTTTAGAATGTGTGCACTCTTTCGGCTTTTCTGTAACTCTCCATAAACCAAGTACTTGTATCCTTCCATAGTCTCTGGGTTGCATATTTCAGGATTAAAGTTGCTCTTGTTACCATTGGCACCCATGTACTCCTGAAGAAGTTCTGAACTACGACCATTCCACAAGGACTTGGATGCTATATGGCGCACCAGAATCTTGTAGAAGCACTGAAGTACCAGAAGACCCCAAAAGAACCAAAATGGAAAACGCCACAATTTGGAGCCACGTGTTAAATTCATGTATGCCACAACTAAAAGCTTCAACACATTTCTCAGCTCAAAAAACATTCCAGAACTAGAGCGGCCATGGATGCTAGAGCGGAGACCAACCAGTATAAGGGCCCAGACTGGGAACAGCTGGTTATTTAAAGGTGCAGCTTGCATAGCCCCCATAATGTATACAAGGGTGGCGTCAGCCACAGGATCCAGGAAGTTCACCATGGATCTGTATATACGGGTGAAGAAAAGGCTTGAGAAGAAGAACATCAGATAGAGGATGGTGAGGATTCCCATTATGACTCGGATGCGAAGCAAGACATAGCTCTCCAGATTCCATTTGATAAGAAAGTTTGCAATAAGAGCACCAGGACTCATTTTTAGTTTTCCCACAGAAAAGTGTGTAGTCAAAATTAACCGCAGACCCTGGCAAATTAAACTGCTTCAGCTTGTGCTTGGCAACCTTGCTGCGGTCCACAGCAATGTTTATCTATCTATTTGGACCTTGTTATGATTTCCTGACAATCTTGTGTCAGTTAAAATGGTGTTGACAATGTGTGCTCTGCTTTTGACCCATTCAGAATTCAGCAGCTTCTCATGGCGTATTATCCACAGCTCGGGCAGATGGAGAGAACTCTAGGCAAGACCTTGAGCCGAGAAGGCAGCACTGGGATCTGGAAACTGGCAAGTTGTCATAGGCCAAGTTCCTCCATTACCTCCAATTCGATATAGCGATTATAAAATTGAACCACGCATCCCGCGGTAGAGGCCTTGATGAATGATGAGTCTTTATTTTTAACACACTTCCTAAAATATGGCGTTTGCCACGGAATAAAAAATTCTGGCAGAGCTGTCTTGCTACACTCTGCATCTATGACCAAAGCAGTTTTAATGTAATACTGCAATGGTGTTGGAAGCAATCACAGAAAAAAAAAATCATATGTCCAGCTTTCACATGAGCAGACTGAATATGGCAGGTATAGGTGTCGGATCTGTACTTGCTCATCCATCTGGATATACCAGAAAACTATTCGAGTTACATAAAAAAGAAAACCATTGAATCAAAAGTCAAAACTGCTGTTCCCTTCCATGATTTGTTTGTCCATTACTCCATTCGATAATCTAGGATTACTGTCCCTATCCCATTATTTCATGATTTGAGGAGAAATGCACCGGAATATATATTTTTTTGAAAAAAAAAAGAGGAGATCGGACTGAGCTGCGAAAATTTTACCGCGATGAATCAGAGAAACAGAGAGCTCCACATCGCACCATGGAGTCCCATTGAGCGAGACGCCAAGGCCATGGCCGACCCAGCAAGCATGCCCCCGTGGAGCGCCCTCCTCGAGTGCCGGCCACGCTCACCACCGCCGCCGCCGCCGCCGCCGCCGCAGTACTATCCCCGACTTGACCCCCATCGCTACCGCTGCGACTGCCGCCATTTCACTTCCTCCGGACCTCCCTCCCCGCCGGCGAGCGGCGGATACAGCGGAGAAAATGGGGGAAAAGCAACT

Coding Potentia
Explanation CPC Score
noncoding -1.09053
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0106800.1 osa-miR5807 Cleavage 4.5 14.077 1 24
Osa11LNT0106800.1 osa-miR5812 Translation 3.0 14.277 1 24
Osa11LNT0106800.1 osa-miR5837.2 Cleavage 4.0 19.467 1 21
Osa11LNT0106800.1 osa-miR7693-5p Translation 4.5 19.874 1 24
Osa11LNT0106800.1 osa-miR160f-3p Translation 5.0 20.688 1 21
Osa11LNT0106800.1 osa-miR169e Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169f.1 Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169g Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169h Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169i-5p.1 Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169j Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169k Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169l Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR169m Cleavage 5.0 19.594 1 21
Osa11LNT0106800.1 osa-miR440 Translation 5.0 22.883 1 24
Osa11LNT0106800.1 osa-miR810b.2 Cleavage 5.0 21.471 1 21
Osa11LNT0106800.1 osa-miR810b.2 Cleavage 5.0 15.995 1 21
Osa11LNT0106800.1 osa-miR1847.1 Translation 4.0 14.63 1 21
Osa11LNT0106800.1 osa-miR1850.2 Cleavage 5.0 14.394 1 21
Osa11LNT0106800.1 osa-miR1882a Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882b Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882c Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882d Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882e-5p Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882f Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882g Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR1882h Cleavage 3.5 15.962 1 24
Osa11LNT0106800.1 osa-miR2090 Cleavage 5.0 18.213 1 22
Osa11LNT0106800.1 osa-miR2096-3p Translation 5.0 20.14 1 21
Osa11LNT0106800.1 osa-miR5491 Cleavage 4.5 14.048 1 21
Osa11LNT0106800.1 osa-miR5491 Translation 5.0 15.901 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus