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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0107100.1

TAGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGAGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGAACTTCTTCAACCTTCTCATCATTTGCAAGAAACCATGAATGAGTGTCACTGCTCTCCCGCTTCTGGCCTCCAGTCCTGCTTGCTCTTACATAGGCAAA

Coding Potentia
Explanation CPC Score
noncoding -1.06313
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107100.1 11 24119341 C T
Osa11LNT0107100.1 11 24118821 C T
Osa11LNT0107100.1 11 24119151 G T
Osa11LNT0107100.1 11 24119186 T G
Osa11LNT0107100.1 11 24119299 T G
Osa11LNT0107100.1 11 24119506 T A
Osa11LNT0107100.1 11 24119624 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107100.1 osa-miR444d.3 Cleavage 4.5 14.57 1 21
Osa11LNT0107100.1 osa-miR5074 Translation 5.0 24.806 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus