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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0107100.2

TAGTTGTTCACCGGTTGCTGGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGAGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGCCGCGGAGATCACTGGAAGTAGCAGTTCAAAGCATAAACGAAGCAGAATAAAGAGATTACAATAGTGGTAAATTTTCCTGAGTGGCCACAAAAGAGAAGGTCGTTCACAAAAGCGAGGGGATGGATTTGGGACAGAAGAAGGAGATAGGACAGGCATTTGGGTTGCACCCTCTTTGTTCATCCGACAATCGCCAACACCTTTTGGAGCTCAAGGATGTCATGGTCATTGAGACAACAGGCGATCGAAATATCCTCAAGAGCTTCAGGGGTGGTTTTGGAGTTGAAATCCGGGAGCTTTGTGTTTGGTAATTGCTTCATTGAGCTTCGTGGAACATTGGCAAGCTACTCCTTCAGTTTCTTCACCTTTAAGGCCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.914341
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107100.2 11 24119624 A G
Osa11LNT0107100.2 11 24119341 C T
Osa11LNT0107100.2 11 24120375 T C
Osa11LNT0107100.2 11 24119151 G T
Osa11LNT0107100.2 11 24119186 T G
Osa11LNT0107100.2 11 24119299 T G
Osa11LNT0107100.2 11 24119506 T A
Osa11LNT0107100.2 11 24120800 T C
Osa11LNT0107100.2 11 24120807 T C
Osa11LNT0107100.2 11 24120937 A C
Osa11LNT0107100.2 11 24121015 T C
Osa11LNT0107100.2 11 24121634 T C
Osa11LNT0107100.2 11 24122021 A G
Osa11LNT0107100.2 11 24122033 G A
Osa11LNT0107100.2 11 24122146 T C
Osa11LNT0107100.2 11 24122561 T C
Osa11LNT0107100.2 11 24122604 T G
Osa11LNT0107100.2 11 24122812 A T
Osa11LNT0107100.2 11 24122913 A C
Osa11LNT0107100.2 11 24122989 G A
Osa11LNT0107100.2 11 24123423 G A
Osa11LNT0107100.2 11 24120549 G A
Osa11LNT0107100.2 11 24123646 T G
Osa11LNT0107100.2 11 24123684 G A
Osa11LNT0107100.2 11 24123778 A G
Osa11LNT0107100.2 11 24123907 C G
Osa11LNT0107100.2 11 24124116 C A
Osa11LNT0107100.2 11 24124162 C A
Osa11LNT0107100.2 11 24118821 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107100.2 osa-miR5074 Translation 5.0 24.806 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus