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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0107200.1

AAAAAAAAAATGCGCATAGAGCAATACAATATGACACCGACATGATACGATGATAGTAACAGAGGGAACCATCCAAATACCAAAGGTCGTTTCCATATCTCTAAAAATGCAGAAAAACATTATATATATGTTCTAGATATATATATATAGCCAGCATCCAGCGAAGAGAAGATTACTAGATTGGCAAATAACAAAGGTAGAAAAGGAGAGGTTCAGGTAAGGCTTCATCTACTATATGTATAAGGGGGTGGAGGGGTCATCATCATCCTCCTTGGTCATACAGAGGCAGGCAGGCAATGGTGGTGGTCTGCTTCATGGGGGGTCAGGTACTCAGGTCACTCTAGTAGAAGACGGCGTTGGCACTCTGGTAGCCGCCGTCGTAGATGGCCTGGCTGGCTCCGGCGCCCATCCCCATGGCGGCAGCCTGCTTTAGGGCGGCGTGCTGACTCATCAGGGCCGGGTTCGCTGCCATCTTGCTCAGCGCCAGGGTGCGCTCGTAGGCTAGGAGGTCGGTCGCCGACATGCCAGGATTGAATGGTGCTGGTGCTGGAGGGGGTAGGGGCGCGGATGCTGTCCCTGGTGGAGTTGGCTTGCTTCCCCAGGAACACTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCATGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAACCAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTTTTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCATTAGCACCCTTTGTTGCCCAATTGCAACGAACTTGACGGTTGCCGAGCCACTTCCCATTCAGTTCATTTATGGCATTTTGTGCGTCCTGCTGATTTCTGAAAGAAACAAAACCAAAACCTCTGGATCGTCCAGTTTTCTGATCCCACATTACCCTAGCATCTGAGCAACTGGTAAATCCAGCGAAAAAAGCAAACAAAGCAGCATCTGTTACTTCCGGGCAAAGATCGCCAACAAAAATATTAAAATGGCCTGATGTATCCTCTCTTTGAGTACTTGCATATGCCCAATTGACTTTTATTGGCTGGCCAAA

Coding Potentia
Explanation CPC Score
noncoding -1.09052
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107200.1 11 24171632 T C
Osa11LNT0107200.1 11 24170808 T A
Osa11LNT0107200.1 11 24170985 C T
Osa11LNT0107200.1 11 24171173 C G
Osa11LNT0107200.1 11 24171313 T C
Osa11LNT0107200.1 11 24171464 G T
Osa11LNT0107200.1 11 24171514 G A
Osa11LNT0107200.1 11 24171879 A C
Osa11LNT0107200.1 11 24172035 C T
Osa11LNT0107200.1 11 24172348 T G
Osa11LNT0107200.1 11 24172841 C A
Osa11LNT0107200.1 11 24171528 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107200.1 osa-miR530-3p Cleavage 4.5 10.239 1 21
Osa11LNT0107200.1 osa-miR1853-3p Translation 5.0 16.361 1 22
Osa11LNT0107200.1 osa-miR1865-5p Translation 5.0 13.832 1 24
Osa11LNT0107200.1 osa-miR2867-3p Cleavage 5.0 16.319 1 20
Osa11LNT0107200.1 osa-miR5144-5p Cleavage 4.5 16.67 1 21
Osa11LNT0107200.1 osa-miR1423-3p Translation 4.5 23.541 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus