\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0107300.1

CAAATACTCTTATCTGCACGTGGTAACGATAGGGAGGCAGATAGAGTTGACTCGAACGAACGACTGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGGTTAGGTATTATTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTGACCCTATAAATTTCCTTGCACATCGATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCTATTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTTTAGATCTGGGAGACAGTATGTGAACAAGTGACCAATAACTGTACAAGTAGATAAGCTGTACGAAGGACGCAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGATCCATTCCATGGCTACTTTCCAATTTCTTTTCACAAATATTCCACCTAATGCTAAAATTTAATTAAATAATTAGTTTTCCACTCAACACATTACTACACAAGGTTAAAACTTCGACACAATTTTTACTGTTGATTACAATATCAAAATAATACACCATTCAAAATACTCGAATTTTAAAAATTAAGAATGGTACCATGAATTCTATGATAAAAAAAGTTAATTCACTCATGAAAAAAATTAAAATAAAAAATTGCAGTTGAAATTGATTCGCCTTTAATTAGATCATTAAAATATAATATGATAAAAAATATTATTTAAAATACCCTGTGCAATGCACGGGTTGACGGCTAGTTTGGTTAATGAAGTAGTTCGATTTATTATGCATCTGTCTTATCAAATGTACTGCAATGTTCAATATATATATATATGCTACTATACCATACGTCCTGGCCCCC

Coding Potentia
Explanation CPC Score
noncoding -1.30027
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107300.1 11 24339989 A G
Osa11LNT0107300.1 11 24339908 C T
Osa11LNT0107300.1 11 24339112 A C
Osa11LNT0107300.1 11 24339180 G C
Osa11LNT0107300.1 11 24340111 T C
Osa11LNT0107300.1 11 24340160 A G
Osa11LNT0107300.1 11 24340263 T C
Osa11LNT0107300.1 11 24340267 A G
Osa11LNT0107300.1 11 24340444 T C
Osa11LNT0107300.1 11 24340538 A G
Osa11LNT0107300.1 11 24340710 G A
Osa11LNT0107300.1 11 24340751 G T
Osa11LNT0107300.1 11 24338996 A G
Osa11LNT0107300.1 11 24339852 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107300.1 osa-miR5543 Translation 4.5 9.644 1 21
Osa11LNT0107300.1 osa-miR5543 Cleavage 5.0 14.862 1 21
Osa11LNT0107300.1 osa-miR1437b-5p Translation 5.0 12.253 1 21
Osa11LNT0107300.1 osa-miR2867-3p Cleavage 3.0 13.229 1 20
Osa11LNT0107300.1 osa-miR2868 Cleavage 4.5 6.609 1 20
Osa11LNT0107300.1 osa-miR5161 Cleavage 5.0 19.873 1 20
Osa11LNT0107300.1 osa-miR5484 Translation 5.0 21.34 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus