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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0107600.1

ATGAGGTGGTGGGAGGGTAGAATTGTACTTTCGCATCAACTTTTCTCCCCGATCCGCCACCCTTCGTCCTCCGTCCATCGTATCCTCTTCCTTCTCCCTCCGACCAGCGACCACTGCTCCCTCCAGCTTGCCGATGGCGTCGACCATCGCGTCCTCTGCTCCCACTCGCGCGTTGACATCCCCGGTCGCCGCCTCGACTACTTTCGCTCGCGAGTTGCCACCGACTGCCACCTCCGCCCGCACTCGAGCGCGGACACCGACGGCCGCCGATTCCTCCGCTCCCGTTTGAGCGCCGACACTTGCAGCCGCAATATTCTGTGCAATATTTCTCCCCCTTCCCCCAGAGCATCCACTCTGCCCATCCCCTCAGCCAGATCCGGTCGCTGCCGAGGTTGGGGCGCTAGATTTGGCAATGGTGGCAGGCTGGCAGCAGGAGGCCTCCCCGAGATTGCGAGGGGCCTGGCGATGACCACTATGAGTGCAACGGATGCAGCGATCGTGTGGTTGGGCGATTGTGAGGGAGACATCTCGGGTCGCAGAGAAAAGGAAAGGCATGTAGACAATCCATTGTGGCACAGGCGCACAGCTGATCCTAGATGATCAGAATTGAAGAATATTTGCACGTGGCCAGTACCTTTCTTTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGGCTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTAGTTGTGTTATTTTGTGTCTGGATGTGATTATGAGTTTATGACTGTTTGCTTATAAA

Coding Potentia
Explanation CPC Score
noncoding -1.13004
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107600.1 11 24733909 G C
Osa11LNT0107600.1 11 24733924 T A
Osa11LNT0107600.1 11 24734004 C T
Osa11LNT0107600.1 11 24734348 G T
Osa11LNT0107600.1 11 24734397 T C
Osa11LNT0107600.1 11 24734604 G C
Osa11LNT0107600.1 11 24734662 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107600.1 osa-miR5531 Translation 5.0 18.852 1 22
Osa11LNT0107600.1 osa-miR166i-5p Translation 4.5 12.974 1 21
Osa11LNT0107600.1 osa-miR1428b Cleavage 5.0 12.424 1 21
Osa11LNT0107600.1 osa-miR1428c Cleavage 5.0 12.424 1 21
Osa11LNT0107600.1 osa-miR1428d Cleavage 5.0 12.424 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus