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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0107700.1

GCCCTTTCGTTCGGAATTTTCTTATGCAATATAAAGCAAAGGAGTACATGCAGATCATGGCCCAAGTGGCCTTAGAACTGGACGCAATCCACGCACACGACGTCTGCAAAACTAACTTAGCAAACCGTGGGCGAAGGAACTAGAAAACAGGAACTAAAACAGAAAATGGAAACGTACACACGCAGAATTATCCAACATATATATATATATATATATATGACCTAAACTTGCCTTCATGGGTCGAGTAGTACGTACGTCGTTGCTTTGTAACACATACACGATTTAATGTAAGCATGCGTAGTATCTTGTTTTTTAATTGGCTAAAGTTATTTAATTAACTAATTACACAGGAAAATGCCTCAGCAATGGGCTCAGCAACGGCAATAATGGGGGCAGTAACCACGCCTAGGACTGTGCGATTTAGATTTTTGCTCCCTGTCTTGCAGTAAAACGCAAAGTCGAAGCAGTTATTCCTCACAGTATCGTAGCTACCGAAGTCGTTGCAGGCTAGCATTTCGTTGGCGCGTCTCAAGACCGTCTCGGGGGGGTCTTCATCATCCATGGAGCAGGTGTGTTGAGCACCAATATTGGAACTCGCAGAGAACCACGAGGGCACTCCGTAGGCGAAGAGGCAAAGATTATCATCTCCCAGGAAGCAGTCAAGGCAGCAGCTGACGACGCCTTCTTTACCCTTAGCTTCAGCGCATTCCCGCTTCCGGCAGGTTTGAGCAGTCGAGGATAACGATGAAATTCTGAAGAAGAAGAGCGATGAAAGGCTGGTGGTGGACTGTTGGTGAAGTGGACTGTTGCATCACCGTTGGTGAAGTGGATGATCCTGTCGTCGCTTTCGTAGATTCCATGATGGGAGTAGACATTGCGCCAGGCGTAGATGTGATCGCCGGGCCTGAGCTGCCACCGATATATACGGCTCGAGAACACAGTCACCCCCCTATCCATAAGGAAAAATGTGCAAGCTACTAGAGAAATTAACC

Coding Potentia
Explanation CPC Score
noncoding -1.15346
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107700.1 11 24892569 T C
Osa11LNT0107700.1 11 24892944 G C
Osa11LNT0107700.1 11 24893029 G A
Osa11LNT0107700.1 11 24893227 G A
Osa11LNT0107700.1 11 24893228 G A
Osa11LNT0107700.1 11 24893384 T G
Osa11LNT0107700.1 11 24893543 C T
Osa11LNT0107700.1 11 24893558 G A
Osa11LNT0107700.1 11 24893219 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107700.1 osa-miR5793 Cleavage 5.0 13.566 1 21
Osa11LNT0107700.1 osa-miR1872 Cleavage 4.5 16.941 1 24
Osa11LNT0107700.1 osa-miR2092-3p Cleavage 4.0 20.188 1 22
Osa11LNT0107700.1 osa-miR2864.2 Translation 3.0 14.302 1 21
Osa11LNT0107700.1 osa-miR5486 Cleavage 4.5 8.591 1 21
Osa11LNT0107700.1 osa-miR5501 Translation 4.0 15.7 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus