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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0107800.1

AGCATGAAACACTATAGTACCCAAATTAATATTTAGCAATTGTTTAAACACACATAGTGCAGCAATTGCATAACCAAAAGGGTGCAACAAAAATCAGACCCTAATCAACCACGAATAGCTTTTGCAACCAATATGCACTTGTAACTCACTAGAAACCTGGATCATCACCGGATCAGAACTTGTAGACCCAACGCTCAAGGTTTTCTTGACCCATGCTTATAAGAAAACCACGATGAGCTTGGAATTCTGGCTTGCAAAGGTGTAGTCCCAGTCTCATCTTATCATCAGGTTCTAGGACATTTTGAGCATGTTCCATAGAGGAGCATTTGGATCTGGGGGGGCTGCAGTTTGTATTGGTTTGTCAAGGTTATTTTTTATTCCAACCAAGGTATTGGTGATCAGTCCATCAACATCATCATCACCATGCAATGTATTTGTGTTTGGTCTTAAGCTTGTTACCCTTGTTGTTATGTGATTGGGGCAAGGTCTTTGGCTTTCCACACCTTTTGAAACTCCTTCTGTTTGCCTTCTAACCACTCATATTACAAGATGAAACTTGGCTAACTGATGCAGCTGCACTAAGGGTTGCCACCTCCTTGCAATCATCACTATCTGACTCTAACTTGTCTGAGTCTTCCCCCTGTGGAACTTTGGTTTCAGCATAGGTTGACATATCATTAAGAAAATCAAAGTCTTCAGTCTCATCATCAAAATCAGTAGCACTAGAAGGATCTTGCATATATGTTCCATTGGCTGAGGAACCACTAAACAATTCTTGCAATTTGTCGAAGAACTGAATTGGCTTTGAAAGAATTCCACGGCCATTTATCTTGCAATTTCAGATCTGACAACAAGCCTTTCGATGGAAACATTTCAGTATGCACATGCAGAGAGAAGGAGAGAGAACATGTTGATTCGTTGAGGATTTGTAAAAGAACTTGAGCCTTCACTAGCCTTCAGCCTTCACTCTGCACTGGATCTGCAAGCTGGAGTGGTTTCCCGGCCATCATCCCGCAGCCATGGAGCAGATTTTGCGTGGATTTGCTTTTGTGAAGGCTAGGCTAGTAGAACAAGGTGGGGAAAGTGGTCT

Coding Potentia
Explanation CPC Score
noncoding -1.20789
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0107800.1 11 24847594 T C
Osa11LNT0107800.1 11 24847432 C A
Osa11LNT0107800.1 11 24847585 A G
Osa11LNT0107800.1 11 24848169 T G
Osa11LNT0107800.1 11 24848247 T C
Osa11LNT0107800.1 11 24848370 G T
Osa11LNT0107800.1 11 24848700 C T
Osa11LNT0107800.1 11 24848831 G A
Osa11LNT0107800.1 11 24849183 C T
Osa11LNT0107800.1 11 24849380 T A
Osa11LNT0107800.1 11 24849930 T C
Osa11LNT0107800.1 11 24850113 A G
Osa11LNT0107800.1 11 24849135 C G
Osa11LNT0107800.1 11 24850699 T C
Osa11LNT0107800.1 11 24850885 C T
Osa11LNT0107800.1 11 24851202 A G
Osa11LNT0107800.1 11 24851675 A G
Osa11LNT0107800.1 11 24851990 T C
Osa11LNT0107800.1 11 24852149 C T
Osa11LNT0107800.1 11 24852190 T C
Osa11LNT0107800.1 11 24852291 T C
Osa11LNT0107800.1 11 24852479 C T
Osa11LNT0107800.1 11 24852508 T C
Osa11LNT0107800.1 11 24852515 A G
Osa11LNT0107800.1 11 24852746 C T
Osa11LNT0107800.1 11 24853278 A C
Osa11LNT0107800.1 11 24853284 T C
Osa11LNT0107800.1 11 24853303 A G
Osa11LNT0107800.1 11 24853696 C G
Osa11LNT0107800.1 11 24853880 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0107800.1 osa-miR5526 Cleavage 5.0 11.975 1 21
Osa11LNT0107800.1 osa-miR396c-3p Cleavage 3.5 14.353 1 21
Osa11LNT0107800.1 osa-miR396e-3p Cleavage 5.0 14.047 1 24
Osa11LNT0107800.1 osa-miR444d.3 Cleavage 4.0 21.765 1 21
Osa11LNT0107800.1 osa-miR1870-3p Cleavage 5.0 17.527 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus