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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0108200.1

TAAGAATATGAGAAAGCTGCCTGATGGATTGGGGCAACTTCCATCTCTCCAGGAACTAGTTCTGAAGAGGACATCACTTGCAAAGATCTACAAGGGAAAGGATGCAAGGTGGGTATGTAAATTGGAGTGAAAACCCCGCCAGCAAAAATGAGTACCGGCATGGAGTTGGCCGTCTACCTGCGAAGATAGGTTATCACAGGTGTATCACATAAGGCGCCGCCTGCGATAATAATCTTCCTAGAGTGCAGGGCCAACAGAAGTAGTATGTTTGTTCTAGGTTCAACCAATACGAGTTTTCCTGAAGCCTCTTAATCCAACACTGAATCATATGCAAAGATGAGTTTAGGTGCATGTTTGGTCACCCATAGTTGATCGACCATAAGGATAGTATGCAGTCAATCACAGTCACAGGCACACAGCAAGGGTTTACAAATGTTCTATTGTTAGCTGAAATATGATATGCGTGTAGTCATCGGTGAAGTGGAGGAGTCGAAGTGGTCCATTCTGCTCTAAAAGTCAGTTTCTCTGAAAAAGTACAATACCTGCAGGCTAACAACTCTTAATAATTGAATTTTCTGGTCCTTGTCACTCATAAAGAGATTTGACTCATAACCAGTGGAGTACAATATATACACTCGGGATACAGACCGTATCAAATACACCAACTTATTGAAACGGAGTCAGGAAGGACAGGAAGGTGCCCAAGCCAATATGTACGGGACTTCCTCTATTTCATATTATAGATATTTTGGGTTTTAAATATATCCATACATTAATCCATGTACGTGCCTCACATATGTGTCTAGACTTATATCGATATTACTGAACCTAGATGAGAAATAAAGTGGTCAAAACGTCCTATAATATAAAACGGAGATAGTAAAACCTAACTCTACCAGTCACTGGC

Coding Potentia
Explanation CPC Score
noncoding -1.21058
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0108200.1 11 24906929 C A
Osa11LNT0108200.1 11 24907075 T C
Osa11LNT0108200.1 11 24907095 T C
Osa11LNT0108200.1 11 24907096 A G
Osa11LNT0108200.1 11 24907113 C T
Osa11LNT0108200.1 11 24907429 T C
Osa11LNT0108200.1 11 24907444 G A
Osa11LNT0108200.1 11 24907536 A G
Osa11LNT0108200.1 11 24907707 A G
Osa11LNT0108200.1 11 24907736 T C
Osa11LNT0108200.1 11 24907784 A G
Osa11LNT0108200.1 11 24907941 A G
Osa11LNT0108200.1 11 24908091 T C
Osa11LNT0108200.1 11 24908110 T C
Osa11LNT0108200.1 11 24908328 T C
Osa11LNT0108200.1 11 24908334 A G
Osa11LNT0108200.1 11 24908382 G A
Osa11LNT0108200.1 11 24908403 A G
Osa11LNT0108200.1 11 24908413 A G
Osa11LNT0108200.1 11 24908874 T C
Osa11LNT0108200.1 11 24909027 A G
Osa11LNT0108200.1 11 24909074 G A
Osa11LNT0108200.1 11 24909117 T G
Osa11LNT0108200.1 11 24909127 T C
Osa11LNT0108200.1 11 24909139 C A
Osa11LNT0108200.1 11 24907569 G A
Osa11LNT0108200.1 11 24907686 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0108200.1 osa-miR5541 Cleavage 4.5 16.997 1 21
Osa11LNT0108200.1 osa-miR2101-5p Translation 5.0 10.09 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa11LNT0108200.1 11 24909117 Seed-coat-color 9.583461761 +