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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0108300.1

ACCTAAGAATGGGTCTTAAATAGTTTGGGGAAATTTGAGTTTGGGCATAAGTCATAGCCATCTTGTGGAAGCATGGCCCTCAATTTTTTTTGTTAGTTTCTTTAGTAAAAACGAAAGGGACAGCTTTGTTTGTCCGATTGCACAAAGTTAAGAATATGTACTATATATGGCTAATAATAGTCAAGAAAGGATTCATATATTGAACTGCAGAGAGAATACGATATGTTGTAACAAACAGGACCAAACATTAATTTTGAGAGAAATGGGCTTTAGGTCAAGGATTCTTGAAGTAAAGGTAAATTATGTCTTAAATCCTAACCGAGCGGAACTATAGGATCTTGCCTTTCCACATGATAGATTTTGCAAATACAAACCTTCTGCTGCCATATGGTAAACTGTTGTAGATCTTGCTTGGTTTTCCTCGAAGGCCATAAGGGCTTCAAAATTGATGCCTTCCAAACACTGGCGGAGCCAGTGGTGCCATTGAACTCGAGCAACTAATAGTTTTTATGTAGCTGCTTTTCTAGATATCGACAATAATTTACCAAATAATCAGTAGTAGAGACAAAGAGAAAGCCGAGGCAGTCGCCTGACTTAGCCAGGAGTTTGATCTACCATTGCTTCC

Coding Potentia
Explanation CPC Score
noncoding -1.19902
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0108300.1 11 24959844 A C
Osa11LNT0108300.1 11 24959884 A C
Osa11LNT0108300.1 11 24959923 A G
Osa11LNT0108300.1 11 24959960 G T
Osa11LNT0108300.1 11 24960035 A G
Osa11LNT0108300.1 11 24960094 T A
Osa11LNT0108300.1 11 24960126 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0108300.1 osa-miR5543 Cleavage 4.5 14.591 1 21
Osa11LNT0108300.1 osa-miR156a Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156b-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156c-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156d Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156e Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156f-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156g-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156h-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156i Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR156j-5p Cleavage 5.0 14.209 1 20
Osa11LNT0108300.1 osa-miR2122 Translation 4.5 12.19 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0108300.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus