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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0108600.1

GTAACCGTGTAAATTTTGATACAGATCAAACCGATCGAGAAACATTACATAAATATGACAACCCACAACCACAATAAACATGAAGCTTTGTGTCGATCAATAACAGAGAGAAACATAAAGATACTAAAAATTCAATCCAGTGTTACATAATGCATTATAAAATAATACTTTAAGAGCACTAGAATCTAACCCTGTTCACAACCATAACATAGAGTCACAAGTTACAAGTTTTATGACCCATTAATTTCATCAAAACTAATAATCACTAAATTATATCATCGTCATCTGAATCATCCAAAACTCTATTTGGAAACTCATCATCAGACTCACTCAACCAGAAATAAGGACATGCTGTATCATCACCGATGTACATATAGGGAAACATTGTATCGTTGTCACCTCTATCAAATGCACCTATCACAGGATGTTTCAGGTCATCCATCCCTTGATTCTTGCATGCATTGCAATGACCGTTTTCATTCGGCTCCAAGGGCCAGCAGAAATAAACTTTCTGTCTGAACATTGTTTTAACCTCAGCAAAATATAACTCCGATGTCCAATCAGTAGAACCTGGGGTCTTAGTCTTCACACTGAAGTTGAAGTGGTGAAAGATATGATTGTAGTTTTTCACATTGAGGCATTGATGACAAAGTTCATCCAATTTGTACTCAATGCCCTTAAGATAATCCCTTTCCTCTACATATTTCTCGAATGCCGTCATAACTTCCTCGCCCATCCATTTATTTCCGTTCTGAACTACGTCCACGGAAGCTTCAGAAGTTGGTACTTGTACTGGGACTGATTGAGCTGGTGTTGTAAGCTCAAAAGCTTCACCATCATGGTGGTCATCCTCAGTTACTGGAAGCCCAGACAAAGTACGAGGATGAACAGAAAGAACATAATGAATCGCATCTTCAAAGCTGCTAAAGGTATGCGTCTTGCGGTATTCCTCAAGTTCACGTAGTTCATCTGACAGTGATGGTGAAGCTTCCTTAAGTCTTGATGGCTCCACAGTTGTAGAATCATGCTCACTCGCAGTCAGTAAGGTTGGTGGTTGTGTTCCTCCTCGTTCATGTCTAGGTTGCCTTTTACGCTCTGAATAGAGAACACTTTGACGAACATGAGTCTTACTTCCAGCTTCTGCATGCCTAGGTTTTTGGGAGGTTGATGGCTGTGCTCCTCTTAGTTGATGTCTAGATTGCCTTTTGTGCTCTTTGTAGAGAATACTTTGCTGAATAGCATATCTTTTAGATTTTCTGGCAGCTGCTTGTAAGGGGGCCGCTTGTAAGAGGAGGAAATCAGGTCGCAGGGTTATCTTGGCCTCGCCAGGGAATTCAGCTGGTCCTCCGGTAGCAGGGTCGCCGCCGCCGCCCGCATCGCGGTCCATGGCGACGGCGACAGAGTTTGGGGAATTTTAGTTTTTTAGGGTTTGGCTC

Coding Potentia
Explanation CPC Score
noncoding -1.32874
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0108600.1 11 25806392 G A
Osa11LNT0108600.1 11 25806718 G A
Osa11LNT0108600.1 11 25807549 T C
Osa11LNT0108600.1 11 25807686 T C
Osa11LNT0108600.1 11 25807703 A G
Osa11LNT0108600.1 11 25807798 T C
Osa11LNT0108600.1 11 25808131 A T
Osa11LNT0108600.1 11 25808253 G A
Osa11LNT0108600.1 11 25808268 T C
Osa11LNT0108600.1 11 25808346 A G
Osa11LNT0108600.1 11 25808474 A G
Osa11LNT0108600.1 11 25808566 G C
Osa11LNT0108600.1 11 25808594 G A
Osa11LNT0108600.1 11 25808663 A G
Osa11LNT0108600.1 11 25808949 G A
Osa11LNT0108600.1 11 25809069 A C
Osa11LNT0108600.1 11 25809132 G A
Osa11LNT0108600.1 11 25809309 C G
Osa11LNT0108600.1 11 25809366 A C
Osa11LNT0108600.1 11 25809429 T C
Osa11LNT0108600.1 11 25809523 A G
Osa11LNT0108600.1 11 25809551 C T
Osa11LNT0108600.1 11 25809744 T C
Osa11LNT0108600.1 11 25810104 T C
Osa11LNT0108600.1 11 25810117 T C
Osa11LNT0108600.1 11 25810123 A C
Osa11LNT0108600.1 11 25810139 A T
Osa11LNT0108600.1 11 25810297 G T
Osa11LNT0108600.1 11 25807396 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0108600.1 osa-miR160a-3p Cleavage 5.0 18.381 1 21
Osa11LNT0108600.1 osa-miR160b-3p Cleavage 5.0 18.381 1 21
Osa11LNT0108600.1 osa-miR397a Cleavage 5.0 16.401 1 21
Osa11LNT0108600.1 osa-miR444a-5p Cleavage 4.5 10.628 1 21
Osa11LNT0108600.1 osa-miR1431 Translation 5.0 20.419 1 21
Osa11LNT0108600.1 osa-miR1865-5p Translation 4.0 17.596 1 24
Osa11LNT0108600.1 osa-miR2876-3p Translation 4.0 14.785 1 21
Osa11LNT0108600.1 osa-miR2878-5p Translation 4.0 22.616 1 24
Osa11LNT0108600.1 osa-miR5523 Cleavage 3.0 20.389 1 22
Osa11LNT0108600.1 osa-miR812n-5p Cleavage 4.5 18.841 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0108600.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus