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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0108700.1

GTCATTATATTGGTATGGGTTACATATATAGATAATAAAGAAGTTTTACAACCTTATTGCATCAATAGCGAAACTCTTACAATTATACATATATTTGGTAGTATTTAAGAAGTTGAGAATTTTGTCATTGTGAACTGAAATATATTGTGCTACTGAAGAAACCTTGAAATTTGATATCATGTGCACTGATCCTTCTGACCTGAAATTTCTTTACAATAGCATGCATCATGGTGTTCTCCTCATCAATAAGTTGTCGAGGCTAATAAGCTCGTTGCTGTTGGGATTTATGGCAACGAAAAGTCTAATTACCTTGACTTTCCATGATTACTTTTCATTGTTAACAACTTGAAGCATATCACATGCCATTCTAGTTATCCTGAGCAGGACTCCAAATCGGAGACGGTTGGTTCGTCCGTAGAAGTCGCTGCCGCGAAAGCCGATGATCTCCAACTCGCGCTCGCTGGTAGCGATGACTCGCGACTATCCCGCGGACGGAGAGAAGGAAAGCTGGATGCGGCGTACCCAGCCAACCAATGCTTCTCCTGCCTCGCTCC

Coding Potentia
Explanation CPC Score
noncoding -1.11261
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0108700.1 11 25967107 C A
Osa11LNT0108700.1 11 25966722 T C
Osa11LNT0108700.1 11 25966849 T A
Osa11LNT0108700.1 11 25966972 G A
Osa11LNT0108700.1 11 25967036 C A
Osa11LNT0108700.1 11 25967039 A T
Osa11LNT0108700.1 11 25967053 G A
Osa11LNT0108700.1 11 25967182 T C
Osa11LNT0108700.1 11 25967383 A G
Osa11LNT0108700.1 11 25967653 A T
Osa11LNT0108700.1 11 25967796 A C
Osa11LNT0108700.1 11 25967842 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0108700.1 osa-miR171h Translation 4.5 8.798 1 21
Osa11LNT0108700.1 osa-miR1854-3p Cleavage 4.0 20.435 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0108700.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus