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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0109100.1

GGAGGGAGACCTGCGGAACTGGTGGGGGAAGAGACTTCACCGCTGGTGGTGACAAGATCACAGGTGCTGCTGGTGGTGGTGACTTCTCTGGAGGTGGTGGCGAGATGACCGGTGCAGGTGGAGGTGGAGACTTCACAGGAGGAGGTGGCAAGATAACTGGTGCTGGTGGTGGTGGGGACTTAACTGGAGGAGGTGGCGAGATGACTGGAGCCGGTGGGGGAGGAGATTTAATTGGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.444624
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0109100.1 11 26317505 T C
Osa11LNT0109100.1 11 26317581 A G
Osa11LNT0109100.1 11 26317678 C G
Osa11LNT0109100.1 11 26317696 T C
Osa11LNT0109100.1 11 26317697 T C
Osa11LNT0109100.1 11 26317833 G A
Osa11LNT0109100.1 11 26317942 G C
Osa11LNT0109100.1 11 26318013 T G
Osa11LNT0109100.1 11 26317644 G C
Osa11LNT0109100.1 11 26317655 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0109100.1 osa-miR530-5p Cleavage 4.5 20.099 1 20
Osa11LNT0109100.1 osa-miR5154 Cleavage 4.0 20.327 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0109100.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa11LNT0109100.1 11 26317678 Lemma-and-palea-pubescence 9.491311073 +