>Osa11LNT0109400.1

AAAAAAAATGCTTCCACATTCCGTTGATCTTAATACAAAATAATACACATACACCACAGTAAGGACATGATTATTTTACAGCCCACTTGATGGTTCGATAACAATACATCTCTGGAAATGGCATGAGGGGTAACAAATCTAGTAAAGTGGCAAAGAATTCTCTCAATAATCTATTATGCGCATACTATGACCACTGATTCAGAAAAATATTATCCAGATCCCAACAAAACCTACACAATTCTGATTGAACCAGTGTGTAGGAGAGTAATAAGGTTTCTACAGCCATTGCATGCTTCAGATTTATTTAACAGCCCAATAGCTTATTATGCACTTCATTGTGTTGAACTTGAAATGCCTTGCTTGTGCTGCAGAGAGGTGAAACGGAATCTTAAGAATTATTAAAGGCGTTTCAAAACAAAGAAAAAGGCTAGGCCTTGATCAGCATAAATTAGTTCATTTAAATTTTAGCTTGCTCAATGTTTTCCATGGCCAAGAGTCAGCATAAACACCAACATTAAACAACACCATATAAGGGGAATCATGCTTGATCAATGTTTTCCATGGCCAAGAGTCAGCATAAACACCAACATTAAACAACACCATATATGGGGAATCATGCTTGATCATCAAGTGGGGAATAGTAAACTATTGACAATCCTGCCAATTAGGTACAACACAAAATCATGCAAATCAGTTGTATCATATTTCAAAAAGTTAATCAAATCATGTAATACAGTCAAACCACACCCCAGTCAAGCTGACCTCACCGCCCCAGAGGTAGTCGCCTCCCCGGAACTTCACCAAGACAGCCCCTCCATGTGCCCTACAACGATGATGTAGGCATCCACATTTGCTGTCATTGGTTGCCCTTTAATATCGGATGCATCGACCCTCACTCCATTATCCAGCTAAAAGCATCAGCCACAATCATGGTTCCACAGATCATCGTCTGAGGAGTTCTGCAAATTAATGAAGCATACCGGCTCCCGAAACCAGTTGCTCTCGTCTTTCTCCCTGATCGGCACTGACAAATCACAAAACCATGCATCCCTTTAATGTAGTTATGTTTTCATCTGATCCATCCCTTTAATTTAGTAAGAAAGTGAAGTTCCTGACTAAGAATAGCTGCATTATTCTAACTTTTTTTTACCAGAACTGCATTCTTTCTTTGTTTTTTTACCAGGACTGCATTCTATCTGTTGAAAGAAATATTATGTACAGTGTACAATTGCTGAGAAAACCTTGACATCAATAGAATTTGCAGGTTTTTTTATTCCATATAATTTTAAAATAAACCCAATCATATTCTCATTGCAAAAGGATACTTTGGAAGTATCAGCATCGTTACAAAGAGATTATAGTGAGGCACAAATAAATGTATGCTCGAATTACTACAGATGAAAGCAACACTCATACGGGATTGTATAATTCTGAAGCATTCAAAAACATTCTCACAGGTTTTCTATAAATCTATGCGTAAGCCATCATAATCTAGAATACTTCAGTCTATGCTCGAGGTAAGTATATAATATACACGGTGTGAATAAGAGTATATTATGTTTCATGCATAAGAGTAGCAGTCCTGCATAAGAGTAGTTGAAAATCATATGGCCGATGTACCTCTTCTCATGCATAAAAAGGATCCAGAATATCTTGTTAATAAAATGCATGTTTTGTGCCATTTTTCTACCTAAATCCTTTTTGTCATGCATTCTGTAAGACCCTAACGATCCCCACTCATGCAAGAGACAAGGTTGCACTAAAACCTAAACTCAATTTATTCATCCAAAAACCACGATCTGAAACCATACATACATCCCTAGTACATCTGAAACAATACATAAGATGCCACTGGTGCTGGTCCTCAATACCGATCTTCCTCATCATCGCTACATGAAGAGAAAAGTATATATATTCCCTCCACATCTAAACTTGTTATAAGGGTTGTTAATTAGAAAAAGGTGATCTCAGCCATAGAAGTAAAAGGATGGCTGAGAATAGGTGAAATTCACCCAGGCAACAGCTGCTGCTGCGGCTGCTCTTGTTTGGGCAATAAAATCAATTGGTTATTTTCAAGTCCTACATTGGGGGAGTTTAAGCCATTGGGGGAGTTGCTTTAGTTGGTTTCAATTGTAATGGTTGAAGGAATGGGATCGAGCGAAGCTTACCTTGTCTGCAGCGTGGTGGAGAGGGTTCTGGTGGTGGCGCAACAGAGAGCACATGGCGCAGGATCCTTGGCGGTGGCGGCGTCGCGGTACAGAAGGCATCCCGGTGGCGGCTCAAGATCCTTCGTGGTGGCGTCGGAGGCGTCTCGCGACGCGGTCGGCAGGAGGGACCGCGCGCCGGCTGCGTGGTCAGCGGTGAGGGGCGGCGCCGCCGTCGCTGGAGGGGGGCACGGGTGTCGGAGGCGTATCGCGAGTTCGCGACGCGGTCAGTGGGGAGGGGCGCCGTCGCGCTGGCGGCGAACGGAAGGGTGGCAGCAGGGGA

Explanation	CPC Score
noncoding	-1.28433

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0109400.1	11	26533924	T	G
Osa11LNT0109400.1	11	26533950	A	C
Osa11LNT0109400.1	11	26534348	C	T
Osa11LNT0109400.1	11	26534574	C	A
Osa11LNT0109400.1	11	26535017	G	T
Osa11LNT0109400.1	11	26535282	T	C
Osa11LNT0109400.1	11	26535409	A	G
Osa11LNT0109400.1	11	26535631	A	T
Osa11LNT0109400.1	11	26535714	C	T
Osa11LNT0109400.1	11	26535952	C	T
Osa11LNT0109400.1	11	26535981	T	G
Osa11LNT0109400.1	11	26536023	G	A
Osa11LNT0109400.1	11	26536046	T	C
Osa11LNT0109400.1	11	26536264	T	C
Osa11LNT0109400.1	11	26536475	A	T
Osa11LNT0109400.1	11	26536628	A	G
Osa11LNT0109400.1	11	26536876	G	C
Osa11LNT0109400.1	11	26537005	A	G
Osa11LNT0109400.1	11	26535561	T	C
Osa11LNT0109400.1	11	26534646	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0109400.1	osa-miR5532	Cleavage	3.5	13.141	1	22
Osa11LNT0109400.1	osa-miR5820	Cleavage	4.5	18.111	1	21
Osa11LNT0109400.1	osa-miR1866-3p	Translation	5.0	15.872	1	22
Osa11LNT0109400.1	osa-miR1875	Cleavage	5.0	16.758	1	24
Osa11LNT0109400.1	osa-miR2106	Cleavage	5.0	13.515	1	21
Osa11LNT0109400.1	osa-miR2122	Translation	4.0	12.858	1	22
Osa11LNT0109400.1	osa-miR5144-3p	Cleavage	5.0	21.652	1	21
Osa11LNT0109400.1	osa-miR5486	Cleavage	4.5	14.205	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0109400.1	11	FON3	Morphological trait	Panicle/flower	RM4601	RM1233

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus