Transcript

Sequence

>Osa11LNT0109700.1

AACCACAAGGACCAGCAAACGTGGCGTGACAGAGAGATCGACCAGCCTCCGATCAATGGGATTATTTAGTTCAGCGATGGCTGCTCCTGGTCTCGTCGCTGTACAGCCTAGCAGTCGTAGACGGTGGGGGAGTTGGGCTGCGGGCGGTCGAAGAGGTTGGCGCCGAGGCTCTTGGTGGCGAGGTTGCTCCCCGGGTGGAACACGCTCCTCCACACGTTGCTGCCCCGCGGCGTCGTCGTCGCCGTCGTCGTCGGAGACGAAGACGACGGCGTCACCGGCGTCGTCGGGGTCGTCGGCATCGACTGCGTCCGCTTGTACGCCGCCCCGCTCGCCTCGCCGTCGCCATCTAAATATTCAGAGGTTTAGTGATGGATCGGAGTCAGAAATTGTTAAGAGACAGTCTAAGATTTCTACGAATTTATACATGGTAATTTAAAAGAAAAAGAGCATGATTTCGAAGGTACAAATGGAACACTCCGGCCGGCCAGAGTCCAGATCTTAACACTCGTTAATATATATAAGCAATATTTCTGGTTACGACGCTCTTTTAAATTTGTTGCCGTCCCTGCTTGTTTGCTTAATAAAGGTAATATATTTTCTCTGTTTCATGTTATGAGACCGTTCTTTATTTTGAATATCTT

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.431728

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0109700.1	11	27117388	T	A
Osa11LNT0109700.1	11	27117030	T	C
Osa11LNT0109700.1	11	27116825	T	G
Osa11LNT0109700.1	11	27117049	C	T
Osa11LNT0109700.1	11	27117178	G	C
Osa11LNT0109700.1	11	27117503	G	A
Osa11LNT0109700.1	11	27117521	T	G
Osa11LNT0109700.1	11	27117542	G	C
Osa11LNT0109700.1	11	27116840	C	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0109700.1	osa-miR162a	Cleavage	5.0	16.887	1	21
Osa11LNT0109700.1	osa-miR1320-5p	Cleavage	3.5	14.435	1	21
Osa11LNT0109700.1	osa-miR1846e	Cleavage	5.0	23.236	1	20
Osa11LNT0109700.1	osa-miR5339	Cleavage	4.5	9.801	1	21
Osa11LNT0109700.1	osa-miR5798	Translation	4.5	21.06	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0109700.1	11	FON3	Morphological trait	Panicle/flower	RM4601	RM1233

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus