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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0110000.1

AGGCTACTAAATAGTAGTGTAGTACCTTACACGAACTTCACAAATCTCACAGCCATCTCCTGTCCTCTTTGTGCAACCGCATGAGAGCCCAGCAAATCTCGTACAGTATATGGAATCACCAGGAGTGCGCTGATCATCGTCTTCCTCACGATGGGGGATGCCATGGTTAGCTGCACAAAAGGCATCTCTCCAGTGAGGTGATCTCAGGTTTTATCTTGGTGGTTTCCTGCTGAACCTTCTGCTATCGATCCATCGAAAAATCTAGTGAGTTGATAGTTGCAGGAAACTGATGCTATCAATCCGTTGAAAAATCAAATGGGTCGATAGTTGCAGGAAACTGATTTTGCAAGACTATAGCTAATTCTTACCGTCGGCATAGGATTAATGCCGGAAATAGGTCTGTAATGAAAGGTACTGGTACTGCTAGGTACCAAATAAAATCCAACCATTGAATCAAAAGGGGCATGATGGGAAAAAAGAATCGATTTGCCGAGCGCCCCTGCTTCTGAACTGCTTGTTGACTCGCCATCGTCCTCGATTCTTCGCTGGCACGCCGCCGCGTGAGTGTTCTTCGACGGCATCTTCTCTGACGCCATTCCTTGCCGCCAGCGCCACCTGTGTGTTCTTCCGCGGTACCACTACTAGTGCCACGACCTTTATTCAGCTGGTGCCCGGTGGCTGTGTTGTTATTTCTCGATCCGTCGCCGCCGGCGATTAACTGCTCGTTGCTCTACGCGATGCCGATTAGTATGGACGGAGGAGGCCATAAATCTTGTGATAATGAGAGGATACCGTGATTGAAAGGAGTGAGAGGAAAAATCAGTGCGGATGGTTCCGCCATGGACTGAGTAGAGAAAAGAAAAAGGAAAGAAAGAAGGATGAGAAAAAAAAGGCAGATGGTTCCGCCATGGACTAAGTTGAAGAAAAAAATAAGAGAAGAAAAGAAGGATGAGAGGAAAAATCAAGGTAGAATGGTAGATGGTTCCATCATGGATGAGTCGAGAAGAAAAAAAAGCAAAGAAAAAAAGACAGATGGTTCCACTTCCGGCATGGACGAGTAAGTGCCGTGCCGTGCGGCGAGGATGCCGGTGACGGGTCGAATTCCTGTTGTCGAGTCGAGGTGGGGAGATGAGGCTGTTTGTTCCTCCTCGCTGCAATGGATGGGAGAAGAAAAGGGGAAGGAGCAGTGGAGCACGGTCCGGCGAGCGCATTGAATCAGGATTCTAGCGAGAGGTGCACAGCTTTGAGGCTAAACACGAAATTATGGTTTTACCCTTCGGATGGTTAGTACCGGGAGGGGTGAGCGCTTGTACCGCTAGGTACTGGATGCTTGACAGCCGTCCGATCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.816814
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa11LNT0110000.1 DTM_#DNAt_MULE_japo_Os0067 Chr11 + 27315644 27315776 132
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0110000.1 osa-miR166a-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166b-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166c-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166d-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166f Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166g-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166h-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR166i-3p Translation 5.0 15.438 1 21
Osa11LNT0110000.1 osa-miR408-3p Translation 4.5 13.582 1 21
Osa11LNT0110000.1 osa-miR166j-3p Translation 4.5 15.438 1 21
Osa11LNT0110000.1 osa-miR812a Cleavage 5.0 23.488 1 22
Osa11LNT0110000.1 osa-miR812b Cleavage 5.0 23.488 1 22
Osa11LNT0110000.1 osa-miR812c Cleavage 5.0 23.488 1 22
Osa11LNT0110000.1 osa-miR812d Cleavage 5.0 23.488 1 22
Osa11LNT0110000.1 osa-miR812e Cleavage 5.0 23.488 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0110000.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus