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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0110200.1

CGCACAGTCTGCGGTGGCGAAGGTGACCGTGCCAGCATCGAGGTCGTAGCCGAAAATCACCCAGGCTATATATAGCTATTAGCCAATTCTAGAGCCAAACGAGAATTCAGTTGCAAGAAGTAATTTTCTTATATCACCGCTCTCTACAAATTAAACGAACCCCACCACAAGAAGCTAGCACATATGAGCTAGCACGCAGGATCGATTGGATGATGATGATTATGGAGGTTTCTGGGAGAGCGCGGATACGATTTCATGGGCATCCTTCTCGATATATTGAACGAGATCCATGGCAGGCCGCTGTGAAACCATCTTCTTCATCCGCTCCGTCATTGATAGCAGGAATGTCTTGACAGATGATTCAAGGCTCTCAAACTGCCTGCCGACCGATTTCACAAGCCCATCCAATTCTTCCAGATCCTTCACGAGTGTTTTATTCCAAGATTAAGTTATTGCTGAACAAAGAAGAAAAAGTACCATTATATTATAAAGGATGAGATGAATTCCGAAGCGCCTTCTTCGGCGATCGTCGACTCCATTTGTGTTTTCAGCCCCTCGTACGCACGGTTGTAATACTCTCCTACCTCCTGTGCACAAGAATTTAATTGATCATGCATGCATGACAATGTATAATAAAGTAC

Coding Potentia
Explanation CPC Score
noncoding -1.06946
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0110200.1 osa-miR5543 Cleavage 4.5 12.594 1 21
Osa11LNT0110200.1 osa-miR395b Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395d Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395e Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395g Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395h Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395i Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395j Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395k Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395l Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395s Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395c Cleavage 4.0 10.104 1 21
Osa11LNT0110200.1 osa-miR395u Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR166l-5p Translation 5.0 13.466 1 21
Osa11LNT0110200.1 osa-miR395m Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395n Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395o Cleavage 5.0 10.104 1 21
Osa11LNT0110200.1 osa-miR395p Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395q Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395v Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR395r Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR1425-3p Cleavage 4.0 10.181 1 21
Osa11LNT0110200.1 osa-miR395y Cleavage 4.5 10.104 1 21
Osa11LNT0110200.1 osa-miR5533 Cleavage 4.0 23.71 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0110200.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus