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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0110500.1

TGGGTGTTTCACTTAACTATTTCATTTGACTATTTCATAAGCAATATACTATTGATCATTGCGAACATATTAGAGTCATACAGATAACAGACATGTAGACATAAACTACGTACATAAATTACAAAAATAATCCTTCCTCATGGTCGACACGTGCATATTGAACTCCATTCAGGACCCTGTGACAACCACTGAAGTGTTTCACTAGGCAAGTTCTGCAACCTGGCAATTCGGTTCTTCAGCCACTCGTTGAAAGAAGACATGTGCTTATTCCTGACCCAACTCTCTGATCGGCCTGGGTTATCTTGTCGGATAACTGCAAGGTGTTCGTCAACGTACGGCACCACCTCAGTCATATGCTGTAGTACCGTGAAATGAGCTTTATCGTACACCTTACGATCCAACCTAATAGTCTTTCTTCCAACAGTACCAACACCGTCAAGCCTCCCTTCGTGATGAGATCGTGGTAATCCAATTGAAGATGTTTCTGACATGTAGTCCACACAAAATTCGATGGCCTCTTCGGTGGTGTAACTCTCGATGATACTCCCCTCGGGGTGTGAACGGTTCCGTACCTTAGGAGGCAAAATATTCCTAATTGCAACGGGCAACAGCTGTGTGATAAGAACGTGGCAATCATGCGACTTCATTCCAACCAACTTAAGATCTTGCAGTGAAACGAGCCTACTGATTCTTGATGAGTAACCAGATGGAACCTTTATACCACTCAAACATGTTAGCAAATCAATCTTCTCTTCTTTCGAGAGAGTGTAGCAGGCTGGAGGAAGGTAAACCCTGCTGGATTCCGTGGTTATGGGATGTAGCTCCGACCAAACACCCATATCTTCCAGATCTCGTCGGGCGTTGAGACCATCCTTTGTAGTACCTGGGTTAAGTAGTAATCCCATTAAACTCTCGCATACATTCTTCTCGACATGCATCAAATCTATGCAGTGGCGAACTTCAAGATCCTTCCAGTATGGTAGTCTCCAGAATATTGACTTCTTTTTCCACATGCTCCTCTCTTTTGTCTTTTGTTTTTCCACATGCTCCTCTGTTTTTTCCTTCGATGTGCTCTTCTCTTTTCGCTTTCCAACTTTCCTCTTTTTTCCAAACTCGTTGGTTATTCCCATCACTAAGTTGTGCACCTCTGTCCCTGTTAGCTCTGTCGGGGGTCCGGCTGTATCTCTGTGTCCATTGAAATTCTTTCTCATATTCCTATACGGGTGATACCTTGGGAGAAATCTCCTGTGACCCATGTAGACCG

Coding Potentia
Explanation CPC Score
noncoding -1.04558
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0110500.1 osa-miR5539a Cleavage 4.5 5.581 1 22
Osa11LNT0110500.1 osa-miR5827 Cleavage 3.5 16.783 1 21
Osa11LNT0110500.1 osa-miR6253 Translation 3.5 6.276 1 22
Osa11LNT0110500.1 osa-miR5539b Cleavage 4.5 5.581 1 22
Osa11LNT0110500.1 osa-miR156a Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156b-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156c-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156d Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156e Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156f-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156g-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156h-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156i Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156j-5p Cleavage 3.5 6.054 1 20
Osa11LNT0110500.1 osa-miR156k Cleavage 3.5 6.054 1 21
Osa11LNT0110500.1 osa-miR156l-5p Cleavage 3.5 6.054 1 21
Osa11LNT0110500.1 osa-miR168b Cleavage 5.0 14.516 1 21
Osa11LNT0110500.1 osa-miR528-5p Translation 5.0 5.14 1 21
Osa11LNT0110500.1 osa-miR1878 Cleavage 4.0 16.181 1 24
Osa11LNT0110500.1 osa-miR5513 Cleavage 4.5 6.04 1 21
Osa11LNT0110500.1 osa-miR2275d Translation 4.0 11.425 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0110500.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus