\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0110600.1

CTTGATCATCTTGGAACCTCGACGAATCGAACAATGATCCAGAATTTTGATTGGAATTGCCAAATGACCAGCATCAGGATTTAACACAGGCAAAGAAGGCTGAACTGCTTCAGATGGTGCGAGAGCCTTCTTGAGCTGAGACACATGGACAACAGGGTGTATCAAGCTGTGAGCAGGCAATTGTAACCTGTAAGCCACCGATCCAATTCGTTGTAAGACTTGAAATGGACCATAATATTTGAAGGATAACTTCCTGTTAGAGCGAGTCATAAATGATTGTTGAATATATGGTTGTAATTTCATGAACACCCAATCACCAACCACAAAACAACGCTCAGATCGCTTCAAATCAGCTTGGCTCTTCATCCGTTGCTGAGCTCGCAACAAATGATGATGAATCAAAGTATTCATGTCATTTCGCTCACTTAACCAAGTTGCAAGATCTCCAGGAGCATCAACAGAGGAGGTGGATAATCCAAAGTAACGAGGTTTGTGTCCAAATAATACTTCAAAAGGAGTCATACCCAAGGCTGAATGAAATGACGTATTGTACCAATATTGAGCCAAGGCCAGCCAATGCTTCCACCGAGAAGGACAAGAATGAACAAAGCAGCGCAAAAACATTTCCACACATTGATTCACACGCTCAGTTTGTCCATCCGATTGTGGGTGATACGACGAACTCATTCGGAGTTGAGTACCAGCTCGGCGAAACAATTCCTTCCAAAGAGAACTAGTGAACACTCGATCACGGTCAGATACAATAGCTTGAGGTAAACCATGTATACTGTGTATGTGTTCCATGAAAAGCTGAGCCACTCCAAAGGCAGTAAAGGGGTGTTTCAGGGGTAAAAAATGAGCAAACTTAGAGAATTTATCCACAATAACCAGTATACAGTCAAATGAAGCTGATTTGGGTAAACCTTCAATAAAATCCATAGTAATTACTTGCCATGACTGAGAAGGTACCTCCAATGGCTGCAATAACCCTGGGTATTTAACATGTTCAGATTTAGCTCTTTGACAAATATCACAATGTTGAACAAACTCCTGAACATCTTTGCGCATGCCTGGCCAAGAGAACAACTGCTTAACTCTTTGATAAGTAACCAAAATTCCTGAATGACCCCCCACTGCTGCAGTATGTAAATTGGCCAGAATCTTTTGTTGCAAAAGTTTATTATGACCAATCCAGATTCTATGTTTAAAATACAAAATGCCATTCTGCACTTCAAAGTTAGATGGACCTGCACCTGACACAGATAAAGCTTGAAGTAATTTCTGAGCCTCCGAGTCAGATTGATAACCATCAATTAGCTCCTGTAGCCAGTCCGGCAAACATATAGAAATGGCAGACACTTCCTCCAAACCATCAGATTGTCGACGAGATAATGCATCAGCAGCCCCATTCTCCAATCCTTTCTTATAACAGATTTTATACCTCAGACCTAAAAGTTTAGTCAAAGCTTTTTGTTGCCAAGGGGTCGACAATCTCTGATTTGTTAGAAAAGATAGACTGCGATGATCCGTTCTAATCACAAACTCGTCATGTTGCAAATAAGAACGCCAATGATCAATTGCTAACATGATTGCAAGACTCTCCTTTTCATAGGTAGACAAGCCTTGAGTGCGAGGTCCAAGTGCTTTACTGAGAAATGCAATGGGATGACCATTTTGCATAAGAACAGCTCCAATCCCTTTGTCCGATGCATCCGTTTCAACAACAAAAGGTTGCTGAAAATTAGGTAAAGCCAATACAGGAGCTTCAATCAAAGCAGTCTTGAGGGCTACAAAAGCCTCCTGAGTAACAGAAGTCCATTGAAACAATACCCCTTTTCGTAGCAAATTGGTTAATGGTTTACAAATAACACCATAATTTCTGACAAACTTGCGATAGTAACCAAGTTAATCCCAAAAAACTACGCAAGTCTTTGACAGAAAGAGGAGTGGGCCAATCCTTGACAGCAATAATTTTCTCCTCATCAGTAGCTACCCCCTGAGCACTAATAATGTGACCCAAATAAGCCAAACTTTGTTGAGCAAAAGAACATTTGGAGAGTTTAACCTTCAATTGGTGATGTGTCAAGGTGCTTAAAACTTGTCTCAGATGATTCTTATGCTCTTCCAAAGAACGGCTGTAAACTAAGATGTCATCAACAAAGACCAAGACAGACTGACGCAATTGAGCTGCTAAAACAGAATTCATAACACCCTGAAAAGTGGCTGGAGCACTGGTAAGACCAAAAGGAAGAACTCTGAACTCAAAATGGCCATTGTGGGTCTTAAATGCAGTCTTATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0258925
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0110600.1 osa-miR156b-3p Cleavage 4.5 24.492 1 21
Osa11LNT0110600.1 osa-miR156c-3p Cleavage 2.0 24.492 1 22
Osa11LNT0110600.1 osa-miR156f-3p Cleavage 1.0 24.492 1 22
Osa11LNT0110600.1 osa-miR156g-3p Cleavage 2.0 24.492 1 22
Osa11LNT0110600.1 osa-miR156h-3p Cleavage 1.0 24.492 1 22
Osa11LNT0110600.1 osa-miR156j-3p Cleavage 1.0 24.492 1 22
Osa11LNT0110600.1 osa-miR156l-3p Cleavage 1.0 24.492 1 22
Osa11LNT0110600.1 osa-miR1851 Cleavage 4.0 12.997 1 21
Osa11LNT0110600.1 osa-miR1862d Cleavage 3.5 18.091 1 24
Osa11LNT0110600.1 osa-miR2873a Cleavage 5.0 12.428 1 24
Osa11LNT0110600.1 osa-miR812o-5p Translation 4.5 19.195 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0110600.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus