>Osa11LNT0111000.1

CAGGAAACGCTACTCTCACTTTTATTGCATCGCAGTAGTAGTTTCAGTACATCAATAACCTATCCAGATCTCGTCCAAGTATAACATGTATCAAGAAACAAATCAGCCATCTGCAGAGAACTACTGCAACTACACCACACTCTCATCCATGTCGCACCCATCACGCATTCAGCATCTTGCCTGCAGATCCCAGAACTTGCATCTTCATTTATGCTGCGGCCATAACGCATTCAATTGCTTGCTTGCAGATTCCAGTCATCGTCGCTTCTGGCCCATACACCTCAATCGGGACGCCGAGTTCTGCGCCAAGCTTGCGCATTTTAGCCAGCCCAGTTTGGTAATTTGGACCACCACGTCGGACATAGATGTGCATCCTTGCAGCCTTCAACTTGGATTCCTTCTCTCTTAAGGCCCGAATGATGCCGCTAAATGTGGCCCCGACGTCGGTGAAGTTAGCTATACCCCCTCCAATGAGAAGAGCTCTCTTGCGGCCATCAGGATCAGCAGTCGCACAATCAAGTACTACTCTAGCATACTGCAGAACCTCCTCCTCGTTGGGAGCACCGCTATACTCTGCATAGTTTTCTAATTCTGAAGCATATCCCAAATCTCCGACATGGTAAATAAGAAAAAAAAACTTAATTTCATGAGAGTAGCATGAAATCCTTGAACAGCTAAGTTAAAACAAGGGAGGAACTCAAAGCTTACTGTATCAGCATATATGACACTGGCACCACCTCCAGCAACCATTGTCCAGATGCGCCCCTTTGGGTTCAAAACGGTGAACTTCAGAGATGCACTTGTCTTCTCATCCAAGTCATGGATAAAGCCTTCTGTAGAACTGAGAACTCTACCGAATGGTAGTGGGAATTCGATATTTCCCCACTTCTTGAAGTTTTGAAAGCTGCTGTGTCATCTAATTCTCCTCTCATGTCCAGAGGATACGGCTCTCCATTCACGATGGTAAATGGGTTCATCTCGAGAAATGAGAAATCCAAGTCTTGGAAGACAGCAAAGACTCCTTTAATGAAATCACCAATTTTTCCACGTGCCTCCAATGGAAGGGTAGCAATCAAGGGAGCACATGCATCAGGTGTCATTGGCTTCTCAGTGGAAAGAAAAATTGTCTTAACCTTGTCCCAGTTCTCCTCAATTTCTATTCCTCCACACTCTGAGAAGCTAATGGTGCTGCCCAGCCTCTCCGAGACAATAGAAAGGTAGTATTCTTGATCATGGGGTACAAATGGCTCCACAATGAAGGTGGTGATTGGAGCCTTGCAGCCACCCATCTCGACCTCAACTCCCAGCCTCTCCTTCACAAACTCCTTGACTTGAGCAATATCTAGGTTGAGGGCCACAAGTCCGCTCTTGCCACGCTTCCCGAACAGCATGTCGGGCTTCACGACCAACTTCATGGTTGACAGCCATGGCTGCTGGTTTACCAGCTCTGTGAAGTCCGTCGATTGTGTAACCTGGGCGGAGAGGATCTGGAGGTCGATACCGGCGAGGCGCTTGAGGTGCTCCTTGAGGAGGCGCTTGGAGTCGTACTCCCGGATCTTCTTGCGCGCCATGGCTCGGTTAGCTGCCGCCGCGAGAGGAGAGGCGTGGGTTCTTGAGGAGGGTTCAGCAAACCAACTGCAGAGGTAGGTAGGTAGGCGGAGTGAACGAAGCCAACCAAGATGAAGGTGGTGGTCTTGGTGGTGTGTGCAC

Explanation	CPC Score
noncoding (weak)	-0.704062

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0111000.1	11	28335276	A	G
Osa11LNT0111000.1	11	28335674	A	G
Osa11LNT0111000.1	11	28335685	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0111000.1	osa-miR319a-3p	Cleavage	4.0	15.759	1	21
Osa11LNT0111000.1	osa-miR168b	Cleavage	5.0	19.305	1	21
Osa11LNT0111000.1	osa-miR2094-5p	Cleavage	5.0	19.086	1	21
Osa11LNT0111000.1	osa-miR2930	Cleavage	4.5	24.838	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0111000.1	11	FON3	Morphological trait	Panicle/flower	RM4601	RM1233

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus