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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0111100.1

CAATAATACAGCTGCGCCCTTCCCTTCTGAAAAGATCTCCCTATCATGGCACTTCTTGGCAAGGATAATAGTAAGGCTGTGGTGTTCTTGGCAGCTCTTATGGTGATGGCTATTGCTTTCTCATCCTCTCATGCAGCCCAAGGTGCATACGAAATACTCCCTCTGTTTCGAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATATTTTTATGTAGGTATATAATTTTACATATTTCACAAAAGTTTTTGAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAATATTTCGAAACGGAGGGAGTAAAGGATACATGCACATACCTACGAGGCTGCACCACGAGTCTCTGTCAAGCCAATCATAATGAAGGAGGCAATTGCGACAGCGATTCTGATCAATGCTGCTGTGGAACTCGCCTTGGCCATGGAGTTGGCACTGGCCATGTACACAAATAAACTCTTATTTGATCGATCTCTAGCCTGTTCAAGTACGATAAAACCTGATAGGGACTGTGTCTTCTCTTTTTAGTTCCATAGAAATGAAAAAAATAAATAAATAAAAACAATCAAATTTGGACGGCGAGGATGCCTTCAAGATTCCTGCAACCCGCTTATCCTTTTATTCTTCCCCCAACTCCTTATCCCCACAGTAACTAGTTGTTTTCTTCGCGCGATCAAGTCCCCCGCCTTAGTGCACCACCGTCTGACCTCGCTGGCTGGCCGAGAGATGACTAGGCCCTCCTCCCACTCTCCACCCCTTCTCTCTTCCTCCATAAGTCGGTAGCGACTTCATTATTGACTTTTAATAGAAAATATATAAGAAAAGATAGCAAAGTACGTAATAATATTTCAAATCTATATATTTTAAAAGATGTCTTTTATTACCATTTTCATGAAGCGAACTATTCAAATATGTATTAACGATCAAAGTGTAAACCTATGGATTACATGTTTTATAAAATTTAACTCACTCATAGCTAGAGAAAGTAATTAAGAGTGAACAATAAATCAGGAGAACGAACCAGGACTTTATATTATTTGTTGATAAGCTCGATTAGCAAGTATTAGTCACGGAAGCACTGACAGCTCTGATAAATATGTCAAATGTTTCCCCGCAAAAAAAAAATGTCAAATGTTCACACCTACAATCTAACCGTGGGCCGAATTATTTGGACCAATTTGAGCCCAGCCGGTAAGGTGTACGTGTCGGCCCAAAACATCAAATCTTATAAAATAAACAGCTAATAAATTGCTCAGCATAAATGCAAGGGATATGAGTAAGATAATGTTTGCATTAATATATGTCATTTATGGTGGGTTATTGTACCCCTATATGAACACCGGCAACAGTGAAGGTCGTAGAAGTAGCTTATCAAATCATCGGGAGAACAAAACACTGTAGCCTGATCTTGTGATGGCAATCATTTCCAAGAAAAATAACACAATGGCCCTCGGCTGCTTGGTGGCTTTTGTGATCTTGGCTGTCGCTCTCTCATCCTGCAAAGCGGACGGTTAGATTTAATTTCCTCTCTACAATGTTTGCTACAAATTTAAACATTGCTCCAAATCTTAGATCCATGTCAAATTTAAAGTTTGTATATATGTTAAACTACAATTGTTTAAAATATTTAATTTCCTCTAAAATATAAATAAAATGATTTATTTAAATATTACCAACATAAGCACAGAATTTCTACATTTAGAAATACCTAGCTTAAAAAAAATAAATTAGAGTTGTGCCGAACAAGGCCAATATACAGAGTTGTGCCAAACAGATTGAAGATTTTATAAGCGAAGATTTTTGAAGTTGTGGTAGTTACTACAAATTTGTTTTTCTTTAGTACCTACTGTAAGCATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.379761
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0111100.1 osa-miR5537 Translation 3.5 10.546 1 22
Osa11LNT0111100.1 osa-miR5537 Translation 4.5 9.804 1 22
Osa11LNT0111100.1 osa-miR5794 Translation 4.5 19.377 1 21
Osa11LNT0111100.1 osa-miR812s Translation 3.0 6.355 1 24
Osa11LNT0111100.1 osa-miR5799 Translation 3.0 6.355 1 24
Osa11LNT0111100.1 osa-miR1437b-5p Cleavage 4.0 16.243 1 21
Osa11LNT0111100.1 osa-miR812a Cleavage 3.5 6.976 1 22
Osa11LNT0111100.1 osa-miR812b Cleavage 3.5 6.976 1 22
Osa11LNT0111100.1 osa-miR812c Cleavage 3.5 6.976 1 22
Osa11LNT0111100.1 osa-miR812d Cleavage 3.5 6.976 1 22
Osa11LNT0111100.1 osa-miR812e Cleavage 3.5 6.976 1 22
Osa11LNT0111100.1 osa-miR816 Translation 3.5 17.971 1 20
Osa11LNT0111100.1 osa-miR1436 Cleavage 5.0 14.278 1 21
Osa11LNT0111100.1 osa-miR1439 Cleavage 2.5 15.582 1 21
Osa11LNT0111100.1 osa-miR2095-3p Cleavage 4.0 11.994 1 20
Osa11LNT0111100.1 osa-miR2922 Cleavage 4.5 8.073 1 20
Osa11LNT0111100.1 osa-miR2923 Cleavage 5.0 10.91 1 22
Osa11LNT0111100.1 osa-miR2929 Translation 4.0 12.328 1 21
Osa11LNT0111100.1 osa-miR3979-3p Cleavage 5.0 6.303 1 20
Osa11LNT0111100.1 osa-miR2873b Translation 5.0 8.856 1 21
Osa11LNT0111100.1 osa-miR5161 Cleavage 4.0 15.28 1 20
Osa11LNT0111100.1 osa-miR2275c Cleavage 4.5 14.814 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0111100.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus