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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0111200.1

GGTAAACTACTCCGCCGCCAAGAGGCCCTAGCAAGGCAGCATTTCCACCTCGCCGCCGCCGTCATTGCCGCCGCGGCGCGGGCGTTTGCTCCGCGACGAGGACTCGATGAGGGGAAATGTCTCCAGCGTCATCTCCGGCGGCGACGAGGCTTTCCAAGTGATCAACGATCCTGCTAGTGTGAGTTCTCCCTATGTATTACTCTATATTGGCATTTATCCTTTTAAGTGCCATCTCCTTCAGACTTCAGTGAGCAAGTAGCATTTTGGTCTTCCTAGCAAGTAGCAACATATCATCACAAAATCAGATCTTATGATCTTGTGGTGTTTTTAATTTCTTCTCCTAATTTGTTTAGGAGTCATAAATGCACCAAAGAGAGGATGTTTGTTTCTTTATTTATGACGGAAGTGACTGAATTAACGGAATAAAACACCATTGTAATAGTCTGGCACTCTGCTGCTGCTAGTACTGCATTTGTGTTACTTAAACTGGTGTCTTCACTTGTGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.07263
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0111200.1 11 28700823 A G
Osa11LNT0111200.1 11 28700920 T A
Osa11LNT0111200.1 11 28701074 G T
Osa11LNT0111200.1 11 28701115 C T
Osa11LNT0111200.1 11 28701209 G T
Osa11LNT0111200.1 11 28701310 T G
Osa11LNT0111200.1 11 28701471 T C
Osa11LNT0111200.1 11 28701477 G A
Osa11LNT0111200.1 11 28701761 A G
Osa11LNT0111200.1 11 28701999 G C
Osa11LNT0111200.1 11 28702065 G A
Osa11LNT0111200.1 11 28702482 A G
Osa11LNT0111200.1 11 28702652 A G
Osa11LNT0111200.1 11 28702560 G A
Osa11LNT0111200.1 11 28701181 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0111200.1 osa-miR166b-5p Cleavage 3.5 24.349 1 21
Osa11LNT0111200.1 osa-miR5154 Translation 4.5 18.348 1 24
Osa11LNT0111200.1 osa-miR812n-5p Translation 5.0 18.348 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0111200.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus