\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0111300.1

TGTCAAAGGTAAGTCACACAAGCTATGTTGCACATTAGATTCTACATACATACATACATAATACATACATCATGAGCACACCAATAATGTTATAGTAGATCTGTAAATATTGAGACCCATAGTAACACAAATATAACCACATAAGTACTGCAAATCTGGAAAGCACATATGTAGCTTAGAAACCTGGCCTATATCTTGATGTATGGCTTTATCCTTCAATAGCATGGCCCTCATTTTCCATAACCAGATTGTGTAGCCAACATCCTTGTTTCTTCATTGTCAATCTTCCAGAATACCTCAGGGCAGCTGTAGTCTGACATGGTAGATGTCAGAAGTGGACATGGGAGATTGCTGCATGCTTTGTCTTTCCCTTCATCTATACCCAGCAAGGAAGGTGCCCCTGGCGCCTCAATTTCTTTCCATATCTGATCCATGGTATATCCATCCATGACACTCTGAGTGCTTTTGAGGACTCTTGCCATGCAGCTGCGATCATCATGAATGTCTCCTCCATCCATACTGATGATTGGCACAGTATCTAGGAGGCAGGATTGGTATACCAGTGACGACGAGGAGGACGAGGGTGACATGTCACCCCTTCTCTCCTGGGCTTTCTTCCTCATGTGTGTCCTCCAGTAGTTCTTGATCTCATTGTCTGTGCGCCCTGGCAGCCTCCGTGCTATCCTAGACCACCTGTTACCCCAACGAGCATGGAGCTCAATAATAAGATGTTCCTCTTTTGGTGACATGCGCCCATGCTTGAGGCCAGGGTGGAGGTAGTTCACCCAACGGAGGCGGCAGCTCTTGCCTGTCCTATTGAGCCCTAATTTGCAGGTCCCCACCCCTCAAACCTGATACTTTGGCAACGAAATCCCAACGGCGGTCACCGAACAGGCGGACAGTGCATACCAGTTGCAGGTCCTCCTGCTCTGTCCATGGTCCCTTGCGCATCTCCTCTCTCACTGTCACCATATTGGGGCTTGGGATGTTGCAATGCTAACGTTGTTCACTTCTACCTTGGATAGGATGGGAGCCACTCTCCGTGTTCTTCTTCCTCTTTGAGTTTGTTGGCTCCAGCTTCACGTTTAGAGCCTTGATCAACTCCAGACCAACTGGAAGGTTGCTATTAGGGAGAGAGGAAGCCACTTTGTCT

Coding Potentia
Explanation CPC Score
noncoding -1.19081
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0111300.1 11 28703975 A G
Osa11LNT0111300.1 11 28704132 A G
Osa11LNT0111300.1 11 28704446 T C
Osa11LNT0111300.1 11 28704796 C T
Osa11LNT0111300.1 11 28704924 T G
Osa11LNT0111300.1 11 28705049 A G
Osa11LNT0111300.1 11 28705161 G A
Osa11LNT0111300.1 11 28705189 G C
Osa11LNT0111300.1 11 28705194 T C
Osa11LNT0111300.1 11 28705204 G T
Osa11LNT0111300.1 11 28705277 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0111300.1 osa-miR408-5p Cleavage 5.0 20.492 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0111300.1 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus