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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0111400.2

GTTAATCTTGTTTCCATGTCCAACACTGGGTGCACAAGTTTTCTCCCTTCCAGAATCATGATTCTTGGAATTTATATGATTGGTCAGGAAAATCTCCGTTGAGGTCAACATTGTTTGCATTACCACGTCTTCTAAGAGCAAATCCATCAGGGTTCATCGTTGGAAGTATATGAAGATGCATGTTTTCCATAATAAGAGTTGCTTTTGCTTGAGATGTTTGAGAAGCCAGAGCAGGCAACCAGCAGCAACGGAGCTCGCTCAATCCCAGTCATCCTCGCTGGCCGTCCCCCTACCCTGTCGCCGCCAACTAAACTGTATACTGTGTGGCTGTGACGATGTGTTCAGGGGCGATGTGCGGCTCCGGCCGTGCCGCTGTGGCCCTGGTCGGCGGCTCGGCGCTCGCTACCC

Coding Potentia
Explanation CPC Score
noncoding -1.07309
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0111400.2 osa-miR2275a Translation 4.5 18.728 1 22
Osa11LNT0111400.2 osa-miR2275b Translation 4.5 18.728 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0111400.2 11 FON3 Morphological trait Panicle/flower RM4601 RM1233
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus