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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0111600.2

GACACTGTAATTCCTCAACTACATATATTTCAGAACTCGTTTAAATCCCAACACAACTCAAGGTTCACTCAAGGTTCAACAATAAATTTGCCTCGTTAGCCTTCAAAAGAAAAACCATGATAACGCTTAAACATCCTCCTCCTCGCTACTCTCAACACAAATAACATCCTCCTTATCTTTCTTTTGCCTCTTCGATGCACAGGCCTTTCCTCCGGCTACTTCTGAATCAATATGTAACAGCATGAGCTCAATGATCGCGCTCCCGTACTTACCTGTCTTAACCTTTCCTATAAGCTTTTCAAGCTCAGCAACAGTGGTTGGTTTTTGGCGGTTCAGGAGGGAAATTTGCTGGGCAGAAAGAACAGCATGTGGGAATACGCCTCCATTACTGGAAGAGAGCTCTCTCCGCAGGTCATCAAGCTTAGCTTCCAAATTACTCATCTGGTTGCGCTTAGTCCGTTTGGATCCACTACCTTTATCCTGAGAGTGAAAAGCAACGCTAAGCTTGACCGGTCTGTTCCCTTGTAGTGCTGGCTTCCACAGTGGTCCCAAGGCAACATATGCATTGGTTGCATATGCTGTATGCTGAAATTCTTCTTTCAAAACCCGATCGAGTATAAGTTGAACTACCAACTGTTCAATGCCTTCTTTCTTAAGATCAATGGACTCATTTGAACAACCTAAATCTTTCCACTTTGCCTTGAACTTATCAACCAGCTGCAACAATGTAGCTCTTTGGTCATTAAGTTGGATATCATGTAGAAGCGAAACAATAATTTTAGTATGGTGGGTAGCGTCTATCTCCTTGAGCTCAAGACTAGAAGTGCAGTTGTCACACATTCCATTGCAATCTTGTGCAGCCTCTCCAAAATGCCGGAAGAAAGCACCACGACGACAGCTCCTCTTAGACTGACAATATCGTACTATGTCATAAAGATTTTGCAGGCCACAGTTTTCATAGAAGACCATTGAACTTTGGCGTGGAACATCACCAGGTCGATAATACAGAATACATTCTGAAGGTAGTCCATCTCTCCCTGCCCTTCCACTTTCCTGGTAGTATGTTTCCATAGATTTACTAAGGCTGTGGTGAATCACAAACCTGACATCTGGCTTGTTGATTCCCATTCCAAACGCCACTGTTCCAACAATGACCTGCAATTTGCTTTTGCTCCAGCTGAACTATTTAGCATCTTGAACCGAGCTGAGCTACGTTCCGCTTTCTTTTTGCTCTGTTAAACCACCGGTTCATTCTGGTTACGCATATGAACTTTCTCACGAGAAATAACATCCATATCTGCATGATAATAATCTGCTAAAATACCCCTTTCAGACAGTTCTTTTGCGACCTGTTCACATTCCTTCCTAGAAAAGCAGTAAACAATCCCAGATTCATTATTCGGGTACGATTCACTTATAAAGTTTGCAATCTCATCAATGACGACCTTTCCAACTGGTGATTTCTCAAATACCTGAATAGCAAAAGAATGTTAAAGGCAAATACAACTATACAAGACTAGTGAAATGTTCTCTTCACATCTTCATTCTTCTGCATTGCACTTTCTTATATTTAAGAAAAAGTCTACTGACTACTGGGGTGAATCTACTCGCTCCTAACAGTGGCTGCTCAAGCTGGCAGCAGCAACTCAAACTCAGGCAAAGGATAGAAAATTGAAGGTTAGGTGAGGAAGAAGGGCAAAGTGACATTTCTCTAGCTCAGTGTACAGATAGGAAGTGTTGGCAAAAGTTGTGGTATTAATTGGCACTTCCCAAATTTTGTGGTATTCTTTGAATTTGGCAAAATCTGTGGTATGGATGGATTTTCCTCGATTTGAAATTGAGAAAAGGCATACTTTATAGAAAAGGTTGGGCCTGTTAATTGTGCTGACAAACTTGACACATCTAGGGATATGAAGCATCTCTATCAAATCAATTTGCACTTTATTTGTCGCAGTTGCAGTTAAAGCTATCATAGGAACACTGGGAAACTGGACCTTTAAAATGCCAAGATTCTTGTAGTCTGGGCGAAAATCATGGCCCCATTGACTACAGCAGTGTGCCTCATCTATTGCAATGAGAGAAAGACGCCCTGCATGGTGGCATTTCTCAAGCTTAGACATGAACCTTTTACTTTTGGATATCTTTTCAGGTGTCACATACAATATCTTCAGTTCTCCTTCACCTTTATCAAGCGCCTTGTAGACGAACTTCTCGACTTCCTTATTGGTAGTTGAAGCCAGCATGTATGCTTGTATACCTAAAGCTGCTAGTCCCATGACCTGGTCCTGGATAAGGGAAAGCAAAGGACTAACAACCAATGTAATTCCATCATGAAGTACAGCAGGTAGTTGATAGCAGAGGCTCTTCCCTCCACCAGCAGCCATTATGACCAGTACATCTCTTCCACTCATGATGGCATTGATTATCTCTCTTTGATTCTGCCGGTATGAAGAAATCCCAAATACATTAAAACGAACATCATCAGCCCGAGAGTCCCATAAGAAGCTCCCAGACCAATCTTTTGGACCAACTGAAGGGGTATTATTGATTGTGTTGTTGGATGCTTTAGATACTTCGAGCATAGCTTTCAGCTGTGATTCACGCTCATACAGCTCCTCTTGACGATCAATCAGTGCACTAATTTGCCCTTGGATGTCATCAAGTTCTGCCTGAACGAGTAACAATTCTCCCTGAATGTTGTCTTCCTCATACATGCTGCAGCCCGAACCGATATGGAGGCAGGTGGACGGAGGTCGGGCGCGTCGCCGTCGCTACTCCCCCAAACCTGCACGCCCCGCCCGCCGTGCGCGCGAGGAGGCCAAGGCCGGTGGAGGAGGCCGTGCGCGCGAGGAGGGCAAGGCCGGTGGAGGAGGCTAGGGTGTCTACGAGGCTTCTCTCTCTACAGCCGCGCGCGCGACGAGGCGAGGCGACGCCTGCGTCCGGCTCGCACCGCACCACACCAC

Coding Potentia
Explanation CPC Score
noncoding -1.2473
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0111600.2 11 28990733 A C
Osa11LNT0111600.2 11 28991295 T C
Osa11LNT0111600.2 11 28990225 T A
Osa11LNT0111600.2 11 28989794 A G
Osa11LNT0111600.2 11 28990211 C G
Osa11LNT0111600.2 11 28991034 A T
Osa11LNT0111600.2 11 28991066 C G
Osa11LNT0111600.2 11 28991689 A G
Osa11LNT0111600.2 11 28991942 A C
Osa11LNT0111600.2 11 28992509 G C
Osa11LNT0111600.2 11 28993286 T C
Osa11LNT0111600.2 11 28994039 A G
Osa11LNT0111600.2 11 28994619 A G
Osa11LNT0111600.2 11 28994686 G A
Osa11LNT0111600.2 11 28994841 G C
Osa11LNT0111600.2 11 28994997 A G
Osa11LNT0111600.2 11 28995250 G A
Osa11LNT0111600.2 11 28995690 C T
Osa11LNT0111600.2 11 28996239 G A
Osa11LNT0111600.2 11 28996764 A G
Osa11LNT0111600.2 11 28996974 C T
Osa11LNT0111600.2 11 28997941 A G
Osa11LNT0111600.2 11 28998134 A G
Osa11LNT0111600.2 11 28998374 A G
Osa11LNT0111600.2 11 28998645 T C
Osa11LNT0111600.2 11 28998666 A G
Osa11LNT0111600.2 11 28999512 A G
Osa11LNT0111600.2 11 28999525 G A
Osa11LNT0111600.2 11 29000279 C G
Osa11LNT0111600.2 11 29000492 T A
Osa11LNT0111600.2 11 28997492 A C
Osa11LNT0111600.2 11 29000769 T C
Osa11LNT0111600.2 11 28990322 T G
Osa11LNT0111600.2 11 28996710 A C
Osa11LNT0111600.2 11 28997312 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0111600.2 osa-miR5794 Cleavage 4.0 11.71 1 21
Osa11LNT0111600.2 osa-miR166b-5p Translation 4.0 16.236 1 21
Osa11LNT0111600.2 osa-miR415 Cleavage 4.0 15.579 1 21
Osa11LNT0111600.2 osa-miR817 Translation 5.0 18.295 1 21
Osa11LNT0111600.2 osa-miR1442 Translation 3.5 13.295 1 20
Osa11LNT0111600.2 osa-miR1428e-5p Cleavage 3.0 15.671 1 22
Osa11LNT0111600.2 osa-miR1860-3p Cleavage 4.5 23.661 1 22
Osa11LNT0111600.2 osa-miR1862a Cleavage 4.5 11.714 1 24
Osa11LNT0111600.2 osa-miR1862b Cleavage 4.5 11.714 1 24
Osa11LNT0111600.2 osa-miR1862c Cleavage 4.5 11.714 1 24
Osa11LNT0111600.2 osa-miR1320-3p Cleavage 5.0 17.266 1 21
Osa11LNT0111600.2 osa-miR1428f-5p Cleavage 3.0 15.671 1 22
Osa11LNT0111600.2 osa-miR1428g-5p Cleavage 3.0 15.671 1 22
Osa11LNT0111600.2 osa-miR2876-3p Translation 4.0 18.548 1 21
Osa11LNT0111600.2 osa-miR5523 Translation 4.5 11.775 1 22
Osa11LNT0111600.2 osa-miR5523 Translation 4.5 6.103 1 22
Osa11LNT0111600.2 osa-miR5805 Cleavage 4.0 19.565 1 24
Osa11LNT0111600.2 osa-miR319a-3p Translation 5.0 19.413 1 21
Osa11LNT0111600.2 osa-miR2100-3p Translation 5.0 15.229 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus