>Osa11LNT0111600.3

GACACTGTAATTCCTCAACTACATATATTTCAGAACTCGTTTAAATCCCAACACAACTCAAGGTTCACTCAAGGTTCAACAATAAATTTGCCTCGTTAGCCTTCAAAAGAAAAACCATGATAACGCTTAAACATCCTCCTCCTCGCTACTCTCAACACAAATAACATCCTCCTTATCTTTCTTTTGCCTCTTCGATGCACAGGCCTTTCCTCCGGCTACTTCTGAATCAATATGTAACAGCATGAGCTCAATGATCGCGCTCCCGTACTTACCTGTCTTAACCTTTCCTATAAGCTTTTCAAGCTCAGCAACAGTGGTTGGTTTTTGGCGGTTCAGGAGGGAAATTTGCTGGGCAGAAAGAACAGCATGTGGGAATACGCCTCCATTACTGGAAGAGAGCTCTCTCCGCAGGTCATCAAGCTTAGCTTCCAAATTACTCATCTGGTTGCGCTTAGTCCGTTTGGATCCACTACCTTTATCCTGAGAGTGAAAAGCAACGCTAAGCTTGACCGGTCTGTTCCCTTGTAGTGCTGGCTTCCACAGTGGTCCCAAGGCAACATATGCATTGGTTGCATATGCTGTATGCTGAAATTCTTCTTTCTAAGAGGGATAAACAGTTCTTCAGTAATCATTGCAAATCAAATCAAGGTCTTTGAGGCAAACAAAGAAAGCAGCTAAAGCTATGAAAATGTGAAGACCATATTATTAGACTTTTTGTTAAAATAGTTTCATAATGTTATGATCTTGCTACTGCTTTTTATTGATATATAAGATTATAAAAGCAAAAGCTTCATTTTTGGAAAACAAAGATTGGGGATGGCCACAATACAAGCACAAACACCTTTGCTTCAAAACGTTTATTGATTTTTTTTCTCAAAACATTAGTGGCAAAATATAATTATTTTGACCACAAGACAATGCAGCATGGTAATTATAGAGAATGTGTCGTGTAGTTAACCAGAAAAAAGGTAGCACTATTTTCCACATTGCCATTATCAAAGCAAAATGCTCATTTCAAATCTACAGGGTTTCCCAAAACCAGTTGGTTTATGCAAGTTTATGAAATCCCAGCTAGTAGCCAGGAGTATAGCAACCACTGGAACCTGGTTCTTATTCTGCTGTCTTACACAGCTACATTTACAAATGGGGGGAATATAAAACCATTATAAGATACAGAAAAAAATAAAAATAAAACAAACCAATAAATATACAACTAAACCAGATCTGGTATTACACCATGGTCTTGGATTTTGGGCTGGGTCTGGAGTGTGTGGTGCTCAGCCCTTGTCCATGGTTGAAGTAGTTCTTATAGAACTTGCAGTAGTTATATAAACATACATTTAATGTTACAAGTGAAGTACTCCAAATAAATGTTTCAATAGTAGCAGTACTAGGTGAATTATAAACCTGAATGTGAGATTCATAATGGACATTAATCACCATTAATAAACTTGTGAATTCGCATGGCAGTATTTGCAGTCACACATACCAAAACCCGATCGAGTATAAGTTGAACTACCAACTGTTCAATGCCTTCTTTCTTAAGATCAATGGACTCATTTGAACAACCTAAATCTTTCCACTTTGCCTTGAACTTATCAACCAGCTGCAACAATGTAGCTCTTTGGTCATTAAGTTGGATATCATGTAGAAGCGAAACAATAATTTTAGTATGGTGGGTAGCGTCTATCTCCTTGAGCTCAAGACTAGAAGTGCAGTTGTCACACATTCCATTGCAATCTTGTGCAGCCTCTCCAAAATGCCGGAAGAAAGCACCACGACGACAGCTCCTCTTAGACTGACAATATCGTACTATGTCATAAAGATTTTGCAGGCCACAGTTTTCATAGAAGACCATTGAACTTTGGCGTGGAACATCACCAGGTCGATAATACAGAATACATTCTGAAGGTAGTCCATCTCTCCCTGCCCTTCCACTTTCCTGGTAGTATGTTTCCATAGATTTACTAAGGCTGTGGTGAATCACAAACCATCTGGCTTGTTGATTCCCATTCCAAACGCCACTGTTCCAACAATGACCTGCAATTTGCTTTTGCTCCAGCGCATATGAACTTTCTCACGAGAAATAACATCCATATCTGCATGATAATAATCTGCTAAAATACCCCTTTCAGACAGTTCTTTTGCGACCTGTT

Explanation	CPC Score
noncoding	-1.17115

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0111600.3	11	28989794	A	G
Osa11LNT0111600.3	11	28990211	C	G
Osa11LNT0111600.3	11	28990322	T	G
Osa11LNT0111600.3	11	28991034	A	T
Osa11LNT0111600.3	11	28991066	C	G
Osa11LNT0111600.3	11	28991689	A	G
Osa11LNT0111600.3	11	28991942	A	C
Osa11LNT0111600.3	11	28992509	G	C
Osa11LNT0111600.3	11	28993286	T	C
Osa11LNT0111600.3	11	28994039	A	G
Osa11LNT0111600.3	11	28994619	A	G
Osa11LNT0111600.3	11	28994686	G	A
Osa11LNT0111600.3	11	28994841	G	C
Osa11LNT0111600.3	11	28994997	A	G
Osa11LNT0111600.3	11	28995250	G	A
Osa11LNT0111600.3	11	28991295	T	C
Osa11LNT0111600.3	11	28990733	A	C
Osa11LNT0111600.3	11	28990225	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0111600.3	osa-miR319a-3p	Translation	5.0	19.413	1	21
Osa11LNT0111600.3	osa-miR817	Translation	5.0	18.295	1	21
Osa11LNT0111600.3	osa-miR810b.2	Translation	4.5	17.088	1	21
Osa11LNT0111600.3	osa-miR1854-5p	Cleavage	5.0	14.687	1	21
Osa11LNT0111600.3	osa-miR1860-3p	Cleavage	4.5	23.661	1	22
Osa11LNT0111600.3	osa-miR1862a	Cleavage	4.5	11.714	1	24
Osa11LNT0111600.3	osa-miR1862b	Cleavage	4.5	11.714	1	24
Osa11LNT0111600.3	osa-miR1862c	Cleavage	4.5	11.714	1	24
Osa11LNT0111600.3	osa-miR2094-5p	Translation	4.0	18.194	1	21
Osa11LNT0111600.3	osa-miR2122	Translation	3.5	16.758	1	22
Osa11LNT0111600.3	osa-miR2876-5p	Translation	5.0	17.68	1	21
Osa11LNT0111600.3	osa-miR5805	Cleavage	4.0	19.565	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus