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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0111900.1

CAGCACAACAAGACAGCAAGTGCGTCACTGCAAACTGGGTGTGCAAGCCAAACAAGCTTAAGAAGAATCATCAGCTTCAGCTCGCAGTTGCGCCAAGCCTTCCTTGTAAACTTCGAAGTCATCAGAGGACCACCGGCAGACAAGGTACAGTCGGAATGTTGCCATCTGCATCCCAAGCAACCGCAGAGTTTGTGCTGCTTCTGGTGAAATGGGCTTCCCTTCTTCACATACTATGTGATCTGCAACTAATTCTACCGCACCTTTGTTCAGACGAACTGGCATTCCTTGCTTGCGTAGAAAGGGTTCCATTTCATGTGTAAACTGTTCTAAGGGGCCTTCCTTAAGCTCCACCGTTTCTGTCGCAATACTTCCTGTCCTGGCGAAATCATGCTCTTCGAATTCTCGAAATAATCTCTCTACATCATCTCTTGGAAGATTAGTAAAGAACAGTCCAGTATCACCTTGTAGGAACTTGGAAAGTTTATGAAGGCCTGTTTTAGCTTCATCAGCAGGTGAACGCCCCAACGCTATCTGCATGACCTTCTTTCCAGCAAGGAATATCCTGCTGGAGGACTTGAGCTGCTCTCTGAGGTCCTTGAGCTTCTGATTCCTCATGTTATCGTAGGTGAAGACATAGGCATTAGCGTAGTGCTCGACGGCATCTTTGATATCGGTAACAACTTTGCCCTTGCGCTCTAATCCAGGCTTCTTCTTGGTCTTGGATAAGGTTACAGGGCGGTTGCGCTTGGATTTCGGCATCGCCTCGTATTCTCAGCTCGTCCTCGTCGTCGGTGCTGTTGCGGCTGGCGGTGGCGGCGGCGATGTTGCTCTGTGGGGTGGTGGCTCTAGGGTTTAACAAGACGTCGTCTGTTTGGATTTGGACACAAAGGAAGGAAAGA

Coding Potentia
Explanation CPC Score
noncoding -1.07659
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0111900.1 12 268369 A G
Osa12LNT0111900.1 12 267966 G A
Osa12LNT0111900.1 12 268893 T C
Osa12LNT0111900.1 12 269435 C A
Osa12LNT0111900.1 12 268308 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0111900.1 osa-miR5802 Translation 4.0 13.138 1 24
Osa12LNT0111900.1 osa-miR168b Cleavage 3.5 16.239 1 21
Osa12LNT0111900.1 osa-miR1866-5p Translation 4.0 12.564 1 24
Osa12LNT0111900.1 osa-miR2928 Cleavage 3.5 17.444 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus