© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0009300.1
CCAATGATGCTACATGAAAAACTGGCAGTTTTTAGTTTTTACAGCGTCCAAAGATGAACGCGTCAGCTAAAGCAGCTCACATATACATCACAGCCGCTTGTAGGAAGTATAATTCTTTACTCAGCCATGAACAACACAGTTACAATCACACACACACACACACACACACGTACGAAGATGGCAAAAAGCTCATGGCTTCATCAGAAATTCAGAAATTCAGAAGTAGGGGAAGCGCGCCCTCATCACCGCCGGCGACGAGCCGGACTCCTGGCAGAGCGCGTCGAGCTTCCACGCGGGCAGGGACACGACGGCGGCCTCATGGCGGCTCAGGCTCTCCTTGCCGGCGCCGCTCGCCAGGGACGGCGAGCCCGGGCTGATGGGCTCCTTGTTCGCCGCCTTCACCGCATCAACGGCGGCGGCGGCGCCGCCGCCTGCCGCCGGCACGACGGTTATCTCCGGTCGCCGGCTCTTGCCTTCCATCTCGCTGCTTCCTGTGCTTTTGCTGCAACAGAGATAACTTGTACATCAGAAGCAACACATTGCCGGACGAGGAGCTGATCAACTGAAAGCTGTCACAAGCCGAACAGAGTATCATTGGTGCCAAAGATCGAACCACCAAACTGCCTGGTGTTCAAGTCACCATCCAAGGCAGACGGGAACCTGTCGAGCCACTGGGCGAGGTTTGGACTGTCAGAGTCCTCAACCCATGGCGAGGTCATGTCGATAGCATCCAGCGCGATGGGATCCCCATCACCCTTCTTCATCTTGGAGTCGGAATGGAGCATGAAATTGTAATGCACATAGGCTTGGTCGGCCAAAGCCTCCTTGTCCAACTTGTTGCGCTTCTCTGAATGATTCCGAACGATTATGCTCCAATCTCTTTGGAAGGTCAGGGTGCTGCAGACCTGGCTGACTATTCTGACAGCAGCATGTTGAAGTGATGGAGCTGAATCACCATATTGTTCCCACCACATCCCTGGGGAGGTGTTGTTACGGGCCTCTTTTGCAATGTTAGAGCCAAACATCCCTTGTGCCTTTCGAAAAGCATGCAGCTCCACTGTGATACCTTGCCTTTGGTCAGGGACTGTAAGCACTTTATCCAGAACATGGTAGAACTCCTCCTTAATACTAGTGAAAAATTTGACTTCTGGATTATACTGAATGCTTGGGTTCAGAAAAGCAGCTGCTGAATGAAGAGGTGAATGCAATTCCACCTGCCACTTTTGCTCGACGATATCCAGAAATGACTTGCATTTTCCTTCATCCATTATGTAGTATGTTCTAATAGAGTCCATCACTTTTGTCATAGACTCATATATATAACCAATAGCAGCCTTGCCTCCTAAGACATCCCTCATGACCCTCAATAGAGGTTCAGAAACAGCAGCTATCTCTTCGACTGCTCTCCAAAACTCATCGTCATCAAGGATCTCAACACATGAACTGCTTAAAGACCTGTTTGCATACGAAGAAGATGCATAGTCAGAGCTGTGAAACATTTGCTTTAGCTTTGGTCTGTGCCTCAACAATGATTGCAGTGTGAGAAAATCCGACACACACTTTGTAATTCCTGAACAAACAAGCTCCTGCCCAGCTATGCACTTTCTCATAAGATCAAGAACCCACTTGTTGTTGTAGACAAATCGTGTTATGGTTTGGGCTTGACAGATGCATCGGTTCACCCAATCAATCTTGGAGAAGTCATCCAACATTGAGTTTACACAAGAAGACGCACATGGAGACCAAAAAATGGTGTTATAATTCTGCATGATCAGCTTGTCTACACTGCCGTAGTTTATATTCCGATCAGTGATTATTTGCACCACATTGTCTGGACCAACTTCCCGAATCACATCATCAAAGAGTTCGTACAACTGGTGACTTTTGATGTGTGGAGAAGCATCCACTGTTTTCAGGAAGAATGTCCCTAATGGGGATGATACAGAAAAGTTGATGAGAGCTTTTGATTTGTTATCAGTCCATGAATCAGCTAATATAGTGCAGCCTGTTGTCGCCCAATCCTTTTCAATCTCTTTGGTTTTCTGCAAAACCTCTGACTTGAGCTTGTGCAACCACTTTGTCTTCAAAACCTCGGCTGACGGCCCTCGGAATCCCTGTCCACCAAGTGCCTCCATCATGTGCCGGTATGAAACAGAGTCTGCAATATTGTAGTCCAACTTATTCTCAAAAAAGAATTCAGCTATGCATCGTTCGGCTTCCGATTGTGGTGCTGAGCGAGCCTTGTTTGTCACAGATGATAGCTTCAGTACTGGAGTAGATACTTCCAACGCAAGGAACTGTGTCTGGTCAGAGGTTGAAGTAATAGCAGGAGAAGTAGCTCGCTCTGGAGATGTAGGCTGAGAGGGAAGGTCCCGTATTCTTCTTGGACGCACCGACAATTCAGTGTCACGTTGCCTCTTGAGAACCTGTGTCTCTCTGTGCTCTTCTTTCGCTGCTATGACAGCCTTCACCTTTTCTATGACATCCGGCTTCACCTTGGTGCAAGGATTGACGCCTTTGCTTGAGATTTGAGACAGATGGAACTTGAGTCTGCTTATACCACCATTTAGGACCTTGTAGCAGAACCTGCACCTGACCTTGTTCCCTTCCATCTTGTCACAGTACTCCCAGCAGACATCCCTCTCCCTCATTTATGGCGAAGCAGAATCCGGCTTCTTGTTATTAAATATCTGAGCAAGCGTGGGAGCGAGCGGCGCAGGGCGGGGGAGGAGTAGGATCTCGCTGGAGTGGTTTCTCTCCTCTGCTCTTCTTCTTCTTCTTCTCCCCCCGATTTTCTCGTCTCCTGGTCGGGAACTCGGGGAGGTAGGTTTGGGGGCAAGCCGCCGCCGCGTCGTCGCGAGCGGAGTCGTTGGGGAAGAGAGGAGAGGAGCGTGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0009300.1 | 1 | 6705129 | T | C |
| Osa01LNT0009300.1 | 1 | 6705810 | A | C |
| Osa01LNT0009300.1 | 1 | 6704608 | C | G |
| Osa01LNT0009300.1 | 1 | 6707318 | A | G |
| Osa01LNT0009300.1 | 1 | 6707633 | T | C |
| Osa01LNT0009300.1 | 1 | 6707769 | C | T |
| Osa01LNT0009300.1 | 1 | 6709280 | A | G |
| Osa01LNT0009300.1 | 1 | 6710131 | A | G |
| Osa01LNT0009300.1 | 1 | 6705744 | A | G |
| Osa01LNT0009300.1 | 1 | 6705336 | G | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0009300.1 | DTM_#DNAt_MULE_japo_Os0243 | Chr1 | - | 6705087 | 6705782 | 695 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0009300.1 | osa-miR5791 | Cleavage | 4.0 | 11.056 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR5798 | Cleavage | 4.5 | 13.35 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR5824 | Translation | 5.0 | 13.545 | 1 | 24 |
| Osa01LNT0009300.1 | osa-miR5516b | Cleavage | 5.0 | 18.073 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR815a | Cleavage | 4.0 | 12.741 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR815b | Cleavage | 4.0 | 12.741 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR815c | Cleavage | 4.0 | 12.741 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1426 | Cleavage | 3.5 | 11.259 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1441 | Translation | 4.5 | 16.169 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1850.2 | Cleavage | 4.5 | 15.452 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1858a | Translation | 5.0 | 12.926 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1858b | Translation | 5.0 | 12.926 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR5150-5p | Translation | 5.0 | 18.42 | 1 | 24 |
| Osa01LNT0009300.1 | osa-miR5519 | Translation | 3.5 | 12.59 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR418 | Translation | 5.0 | 23.352 | 1 | 21 |
| Osa01LNT0009300.1 | osa-miR1876 | Cleavage | 3.5 | 14.748 | 1 | 24 |
| Osa01LNT0009300.1 | osa-miR5516a | Cleavage | 5.0 | 18.073 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009300.1 | 1 | An9 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0009300.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0009300.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0009300.1 | 1 | Rf | Physiological trait | Sterility | nan | nan |
| Osa01LNT0009300.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0009300.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0009300.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0009300.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0009300.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0009300.1 | 1 | gp1 | Morphological trait | Panicle/flower | RG532 | RM259 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)