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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0112100.1

ACACTGATTTGTGCATCATATCTAGTATTCTCTGGCTTCAACTCGGCTGGCTCCAATGGTTCAACAGGGAGAGATTCAACAGAATCAAAATAGAAGAACTGGTAAAGTGGATGGAATTTCCCTGAGCATGCTTTCACAACCTCTTGACCTACAATGCCACCAAACATTGCAGCCATAGGGTTCAGAACAGCCCTGGAACCACTTGCAAAATGATGCAGAAGCTTGGAAAGCCAAATGCAGAAGTGGTGGACGGTCGAATTTGGAGAAATCGCTCATGAGAAATTCTCCTGGTTCCTTAATGGCGTCTTTCAAGGTTTTGAATTTAAGAACCTTTGGTGGCTTGACCTGAGTAACAATACCACCTCTAACATATGTCCCATATGAGGTAGTGTCTTCTTCTAGAGTAAAAGAATAAGGCCTAGCGTTCTTAATCTTTCTTGGTTTCCCATCATTTAGTTCACTCATTCCATGGACTTCTGAGAACACAACTAAATCACCATCCTGGAACTCCAGACGCTCATCATCAACACAGGAAACAAGCGCAGGGTTGTCATTGCTGATCGATGCTACTATTCCTGTATGTGGCTCCTCTCCATCAACATCCAATACAGTAAACTCAGGACCAAAGTCACAAAAGACACTGCCAAAAAGGCCACGAATTTCTGACTTAATGAAAGCAATTGGTGGCTGATGGTTGTGGCAGTAACTGTCAAACTCAACTGCTTTCTCTAAGCTGATATCAGTAAAGACCACAGCCTGGAAATTAGAAAGCTGCTCCTTAGTCAAATCACCGGTTATAGTAGAGATAATAACAGCATTATTGAGCTCCTGTAGCTTCTGAACACAAGTTTGAGCACGGTTTTGACCAACATCCTTCTCTGTGAGGAAGAAGTTGCTTGATAAGTCCCATAGCTCCACATTGTCATCATCGTGCAAGGTTACGGACTTGACACCCGCAAGGACAAGGTTCTTGGCGATCTCGGCGCCGAGGCCGTTGAGGCCAGAGACGAGGACGTTGGAGGCGAAGAGGCGCTTCATGGTCTCGCGGCCATAGACGGCGAGCTGGCGGCTGTGAAGGTCCTCATCGATCTCGGGCGCTCTGCCGGTGGTCATGGTGTGGTTGTCGTCGGCGGGTTCGTCGTCGGCGCGGGTCTTCTTGTGCAAGTCGTGGACGACCTCGCCGGCGAGATCCTCCCGCTTGCGGGTAAGCATATAGTGTAGGGCGCCGCCGAGGAGGCCGACAGCGACGGTCACCGCGAGGACGAGGCTGAAGGCAGCCGGCGAGAGCTGCCGCGTCAGATCCAGGACGCAACCACGGCGAGACCTTCTACCTTGGATTCGTCTCCCTATTCGTGGATCGACTTGGTTCTTCCTTCGCTTCCCTTGTATACTCTATCTAGGGTTTTGAGGAGGAAAGAAGAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.782667
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0112100.1 12 318369 A C
Osa12LNT0112100.1 12 317732 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0112100.1 osa-miR5525 Translation 5.0 19.785 1 22
Osa12LNT0112100.1 osa-miR5532 Cleavage 5.0 16.392 1 22
Osa12LNT0112100.1 osa-miR444a-3p.2 Cleavage 4.0 24.843 1 21
Osa12LNT0112100.1 osa-miR444d.2 Cleavage 4.0 24.843 1 21
Osa12LNT0112100.1 osa-miR444e Cleavage 4.0 24.843 1 21
Osa12LNT0112100.1 osa-miR2866 Cleavage 4.5 21.26 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0112100.1 12 gy12 Morphological trait Seed RG869 RG98
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus