\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0112600.1

GGAGTAGGTAACTTGTATGGGTTGGTTGATTCCAAAATGAGTACAACACTGAAAGGAGGTTTTAAAGGATGTACAATACTGAAGACTGCACACCAAACTATAGCAGTACAGTACTATTCATGAATTTGTGTCATGATGTTGCTCTCAAAGATATTCTGGTGTCTTTTTCCAGCTTCATTTTGCAAGCCCAATACACAAGTTGGAAGTTGGAACCACTGGTGGACTTAATTCCAACACATGAGCAGTACAGGGACAGATTCCTACCTTCACTTCTATCACTGTCTTAGGTTGCTTGCACCAGATACACAGGTAAAGTTGAAACATATACATTTGAGTATGTTTCCTCTGCTTTGGAGCAAGTAAATCATGCATTTGAAGTAGTAGGGAAACCAATACCATTATCAATTGTAGCATGCACATGAGAGCAGCTGGACAAATCAAAGCATGATCGAGTTAAAAATGAATGGGAAACAGGCAACATTACTACAGTAGTTTATTACTCCATGCCTCATGCAGAGAGCAGTGCTGCGAATTGATCTGCCAGGCTCTTCACAGTCGTCGGAGAAACTGCAGATTCTCCACCCAGGTACCACTTCTGAATCATCTCGGCCACATTCTTGTTCTCCACTGTCAGCTTCGCCTCGCCCTTGCCTTCTGTCACAAATGATATCTCTGCAATTCCAGGGGTGTTAGGAAAGTGGAAGGTGAGGACGGAGTTGGGCTTGAAATACTTGGACTGAAAGAATTCAGTCACCTTCTCCAGAGACTCTTCCTCCTCATCCTCGTACTTGTCCACTGACACGAGACGGTCGCGCACTGAGCTCTCCAGCTGCACGCCGTACTGTGATCCTTTGATCTCCTTGATCACCACGATCCTGAATAGTTTCTCCACAGGAGCTAGCGTACATGCACAGCATCAATCAGCATGACTCAAATGAAAAAATGAAACATTTTTTTCTTGCAGTTATGCAGGAGCGGCAGACTGAACCTTACTCTGTTTTATTTTGTAGGATAGAACATTGTTCTATAAACTCTACAGAGATAATACTACTATTTGTGATCTGTAACTGGAAATGGGAGAATGGTATTGATATACTATAGACAAGCAATTCCAAATCCGTTTTACATATTTCTGAAATGCAAAACCTGAATGGTGGAGTCATTTTAGTTACCAGAAACTAGGGCCTGAAAGAAGCCATCATCCTGCACAAGCTCCTCTGCCTTCTTGCCCTTCCAACTCTCCAAATGCCCTAGTACATTGTCCTTTTCAAGATACACCCCGATGGCGTTGTATTTGATCTGAAGGAAATGAATCTCAATGTCTGTAATGCCATGGGCTAGCAGTGATAACGGCTTACTGACGGTGATCTCCTGAGGAAATGGGATGCCCTCCACCTCCACGGTGGCCATCTCTGTGCCCATTCTTCTGTAGAGGTAAATTAATAAGCAATGGAGCCGAAACTGAAACTGCTTTTGCTCCTTGTGATGCGGTAATTGTTGATGAGAGAAATAGAGAGGAGAGGAGGAAGATCGAAAGAGCGTGAGGAGTAGGGC

Coding Potentia
Explanation CPC Score
noncoding -1.08417
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0112600.1 12 768279 C T
Osa12LNT0112600.1 12 768250 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0112600.1 osa-miR5789 Translation 4.0 16.581 1 21
Osa12LNT0112600.1 osa-miR6245 Translation 5.0 16.861 1 21
Osa12LNT0112600.1 osa-miR1856 Cleavage 4.5 13.664 1 21
Osa12LNT0112600.1 osa-miR5153 Cleavage 5.0 16.109 1 24
Osa12LNT0112600.1 osa-miR5156 Translation 5.0 20.417 1 24
Osa12LNT0112600.1 osa-miR5161 Cleavage 4.5 20.01 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0112600.1 12 gy12 Morphological trait Seed RG869 RG98
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus