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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0112700.1

TCCAGTCTTCTCTCAGTAAATAAATTACTTTGTGCTTTTCTTCATCCACCTTCCTTGAGTAAATAAATTACTCTTAGACTACAGGAGTAAAACATTTATGCACATCCGGCAAATGTTTGAACGGATTTAGAATTACAACGGCTGTCTGATCACACACGCAATGTGATACATTTGTAGAATGCACAAAAACAAATAAAAAATTACAACACCACCAACAATGATGGATATGGCCGGCACCAGACTCAGTCACCTCCCTGCCGACGCTGCTGCTAGTCCTGTGCCATGCCGCATAATAATCTTTATGGCCCTGCTCGTGTATCCTTGCCAGTGTCTCCAATAGGTGGTTTCAACGAGAAGTCTCGATTTACATTCAGTATGACTCTAAATGACACAGATTATAAGCCAATAAAATAGAAAGTGCCTAGCATGTAGAGATCACTGTTAGTCACTTTCATAACATCAAAAAATTAGCACATTTTAATAAAAATCCTCTTCTTGATGTACCCCTTGAAGCTGTCAATTGGAGCAGCAGGATTGGCTCATCAACATGCCATCAACCCGTGCCTCAACTACAGTATCCCACACTGCACCTATTGAAAATATACAAACTTGAAAATAACAAGATTAATCCAGATATCAAGTCCAAGATCCATCAAGATTTCACATAACAGTGGTCTATACATGAAGAATATAATGAGGCACAGCTGAATACAAAGCAATGTGAATTTGGAATATTATAGGCATTGTTTCAGTCTTTCACCTTGATTTTTTTCTCCACTCATTAAAGATATATGACAGTAACACCACATATGCAAGAACTAAGTTATTTTTTTAGTATAAAAAATTATGGAACAGTTTATTGTTTCACATACCTCAGGAACACATATATGTTACTGCGAAGTGGAGCACACCATGACCCGATCGAAGCACATCTGAACTTCGCTGCCTTGTGCAAGCCGCTTTGGCTGATGATGAGGATGCATCAATCAAATGAGGAGGCCGGCATGGCGTCATCGGCTGGGGAGAGGATGGGCCTTCGGATCCAGAAGGCAGGCAGCCCTCTCTCCTGGACATCAGCCTCCACAATCCTCTTTCTCCCCGGCCACCGTGTGGGGCTGTGACGAGCCGACAACTGGGTGAGGGGCTACAGCTGCTCGTCGCCGCCCTCCTTTCCAGACAGGATCTGAGTAAATGAGAACACGAGTTTGCAGGAGATGGGAAAGCATCGCCACTGCTTGTCGTCAGAGCGTTTGCGCCGCAGCTCCTCCGGCACGGCGGCCGCCTCCATCCCCATCCCCCATCCCCCGTGGCATCACACCCTGCCGTCGGCGCCGCCACAGCGGACACGCGGACGGAGAACGAGATGCGCCCCCGTTTGGGGTTCCGGTCGGGGCCACGCTGGAAAAGAAGAGGAACAAGAAGAACAAGAAGAGGAAAGATACCCTCGAGGCGTCGCTCGTTGTTGTCCGCCCACCTCTCCTCGGCTCCGACCTGCTGCGGCTGCGGCGGCGACTCCTTTCCACCTGTCGCTGGCCGATTTCGCCGTTCTCCCGCCGACGCCGCTCCCTTGGCCGCCCGTTCCCAGATCCTAAAAGTTCGGGGTATAACCGTACAAAGCAGGTGTAAAGAAACTGGCTAATATGTGCGGGAAGTAACAACATTACTACAGGGTAAATGCATA

Coding Potentia
Explanation CPC Score
noncoding -1.16741
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0112700.1 12 797691 T C
Osa12LNT0112700.1 12 795494 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0112700.1 osa-miR169b Translation 5.0 20.67 1 21
Osa12LNT0112700.1 osa-miR169c Translation 5.0 20.67 1 21
Osa12LNT0112700.1 osa-miR414 Cleavage 4.0 19.876 1 21
Osa12LNT0112700.1 osa-miR2873b Translation 3.5 8.542 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0112700.1 12 gy12 Morphological trait Seed RG869 RG98
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus