Transcript

Sequence

>Osa12LNT0112800.1

TATAGATATACTCTTATCTTATTGTTAGTCTTTGTTGCATGGACTTAAGACCAGCTTATTTTATAGGGCCTTAGGTGTAATATTAATGCATAGTTCTGAGGGAGTGGATCGTCTATGAAGCCATTTTTTGCGTGATAAATATTGATATTTGCTTGTGAGTTCATACTGTCCTCTTCTATATTTTGATGAAGCAGATCTGCAAACCCCCTCCTACGCACACAAATGACCCACCAAAAACAAGTCCCCCAACTCTAGGGCATGCTTGTTGTTAGCAAGAACAATCGTCATAGCAAACGAGGATAACAGATAAATTGGAGGGAAAAGCAGGACTTAAAAAAGGTCATTTGGCAAGTAGGCTGTGAAATATACTTACTGTAGAGCATGAGGTTTATTCAGTGCCCTTCTTCTTTAATAAAATAAGGACCAGGCTTAATAGGATAAGGATAAAGGTAGCCTTCCGGCCGAGAAAACCCAGCTTCATTCATGCGGTCACTGAGCACATGTAGTATAGGTTTTTTCAGTCCATACTCATGCCTGTTCTTTTCAAGATAAGAGTTAGCTTCCTCAGCCACCTCTATTGTGAAAGCAAATCTATTCTCTTGAGATAACATCAGCTGGTTGATGTCCAAGCATATGATCTTCCCATTTTCCCTAACTTTTCTCACTTTCTCTTCTAAGAAAGGGACACGTTCCAACTTGTACCGCAACATGTCATCCTCTTTGGTCACTGAGAGTTTGGATTGTGACCAAA

Coding Potentia

Explanation	CPC Score
noncoding	-1.33731

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0112800.1	12	833881	T	C
Osa12LNT0112800.1	12	835243	C	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0112800.1	osa-miR164a	Translation	5.0	15.524	1	21
Osa12LNT0112800.1	osa-miR164b	Translation	5.0	15.524	1	21
Osa12LNT0112800.1	osa-miR164d	Translation	5.0	15.524	1	21
Osa12LNT0112800.1	osa-miR164e	Translation	4.0	15.524	1	21
Osa12LNT0112800.1	osa-miR164f	Translation	5.0	15.524	1	21
Osa12LNT0112800.1	osa-miR1869	Cleavage	3.0	19.773	1	24
Osa12LNT0112800.1	osa-miR1862f	Translation	4.0	20.685	1	20
Osa12LNT0112800.1	osa-miR1862g	Translation	4.0	20.685	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0112800.1	12	gy12	Morphological trait	Seed	RG869	RG98

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus