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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0112900.1

GACCGCGGAAACATCTTCAATTTTTATAATAGTATAATAATAGCTTATACACATGCTTCTTAATTTCAGGTTTACTTCTTAGTCATGAGCAAAATGCTATGTATTTTTACCAGGTCACAACTTATCATTACAGCACATCCTGAAAGAAACTCCTAGCTAGCTTATAGCTAACATCAAGTCATCATCCCCATATGCATATTGGACTGTGCTCACATCTTATTGAATCATCGAACGTCCAATGCTCAGAACCCAATGGTGAGTTCACAATAAACTCGAAGGCTCTCTCCAATTCAAAATCTATCAAATACTCTGGCATATTTTGTACCATACACAAGTTTTCAAATCTTTCATCTTGAACTTCATGGGCTTCGTGTTCAAGTGTAGGGCTATTGCATTCGTTTTGATTGATAGGTTCCATACTGTGATGGGCTGTGTCGACAACATATGGATTGGCTATGCCATCTCCCCTGCATGTGTGTTGGCCATAGTAGTCAACGTTGAACAACTTTGATGTTCCATTTCCACTGGAATCCATTTGTTGCACTGTCTTTGTTGCAGGACAGCCTTGCACTTTACTATTGGCACACCTGTAGTAGCTCCTGGAATGTTTTGCTCTAGAGATCCATTTCTGACCATACTTCCTCCATTGATGTCCATCATTGTGAGGTGCTTGAGCCACAGTTGAACCTGTGTGTTCTGCATTCTTTCTTCTCTTGCTAACACTTTCTTTGGCTTCCTCCTCCAAGTTGTGGTTGTCCATGATATGCTTGTCACCTTTTCTCTTACCGATGGTCAGTACAGATAATTTATTTCTCCCTCCTCCGCTGCGTACCCAAGCATAAGGCCCCACCACTGATGTCGATGATTTAATTACAACGCTGCAGCCGTGCAGTGCCTTGGTTGTTCTGCCCTGGATACCGATTTGGTGAATAGGTGTGGACGCAGCTCCTGCGGATACCCTCCTCCTCGCCATCGCTATTCATCTGTCATCCCTTTCCCCCCTTCTTCAGGGTAGCGGGAGATTAGAGGTGGATGTGATGCGCCGGTGCCGGTGGGGTATACGGCGGCGGCAGGGGTGGGATGGAGCCGCGGTGATGAGGGGATGAGTAACGCCGGCAATGGAGACGGAGAGGACTAGAGGGGGAGGTAGCGGCGGCTTGGGAGAAGAGGCGGCGCGCGGCGGCTGGGCCTCAGGAGCGGAGGCGGCGTGAAGACGAGAAGAGTCGCGTTCTTTCTTCTTCTTTTTTT

Coding Potentia
Explanation CPC Score
noncoding -1.24873
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0112900.1 12 817578 C A
Osa12LNT0112900.1 12 818548 T C
Osa12LNT0112900.1 12 818654 C T
Osa12LNT0112900.1 12 820476 C T
Osa12LNT0112900.1 12 820835 G A
Osa12LNT0112900.1 12 821185 A C
Osa12LNT0112900.1 12 821326 C T
Osa12LNT0112900.1 12 821357 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0112900.1 osa-miR156k Cleavage 4.5 12.325 1 21
Osa12LNT0112900.1 osa-miR159a.1 Translation 3.5 9.909 1 21
Osa12LNT0112900.1 osa-miR159b Translation 3.5 9.909 1 21
Osa12LNT0112900.1 osa-miR159c Translation 4.5 9.909 1 21
Osa12LNT0112900.1 osa-miR159d Translation 4.5 9.909 1 21
Osa12LNT0112900.1 osa-miR159e Translation 4.5 9.909 1 21
Osa12LNT0112900.1 osa-miR159f Translation 4.5 9.909 1 21
Osa12LNT0112900.1 osa-miR2097-3p Cleavage 4.0 24.195 1 22
Osa12LNT0112900.1 osa-miR2926 Cleavage 4.0 12.469 1 20
Osa12LNT0112900.1 osa-miR3979-5p Translation 4.0 24.463 1 20
Osa12LNT0112900.1 osa-miR3979-5p Cleavage 5.0 10.899 1 20
Osa12LNT0112900.1 osa-miR812o-5p Cleavage 5.0 16.159 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0112900.1 12 gy12 Morphological trait Seed RG869 RG98
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus