© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0009400.1
TATATGTATCCCGAAACACAGAGCTACTATTGCGTAAGTAACATCATACTGGGTACAGCAGCAAGCATTCGTGTTTATCGTGTGCTATGCATGATAACATAGAATCCTAGCCACATAATGCGTAGGGTCGCTGTTAAGTCTTTACAAAAGGAAGCGTCTGGCTACAACCATGCTCAAAGGTCTATAGCGAGCGACAAAATAGCACAGTTTGTAAATGCATGGCACAATATTAACCAACGAAACACTGTAGAGTGGTTCTAAAGAAGCTTGGTTAAGGTACCCATGCAAGCAGAGCATGAGACCGATGCCGAGTCTGATACAACTGTGCAAAACAAAAGCGTACACATTCCTTTGCTGCATCAGGCCTTGTTCTCGCCGCTGCCATCAGCGGTATCGTCACCACTTTCTTTGAACAACTTCTTAGCTGTGCCAGTGCCAGGAGATGGCCTTGCCCTTTTGTTGTGGGACTTGGATGTGGTTTTCTTAGTAGCAGAATGACCACCCATTTGGGAAAGGGGCAAATTGTCATCATCCTCATCTTCTTCGTCAAGGACCTGAACTGGAGTCTTGGACTGGCATTCAACATCATCATTTTTGTCCTTGGCTCCAACAACCAACGGACTGTTTAATCCAGCCGATGGAGTGGCAGGCGGATCACTGAATCCAATGGATGGAGCAAATGCTGCTGTGGACTGGCCAACAGAGAGTTCATGTGTTACACTTGGTGATAGAGCTAGAGAAGGTACCATGGAGGATGCCTGAGATGCAGATGGAGATTGTGGGTGGCAGGATTCTGGCTGTTGCCGTTTCCGACAATCATATTCACTTGGAATGAGACATTGCTTGAAGACATGGTATTCTCGGTAATAGCAACTTTCCAGGTGAAATTTTCCTCAAGCAAATTTGTGATCTCCTTGGGTATGGCCTCCTTGCCGGCAGCGTTGCCCTCTAACAGAATCTCCACTGATCGACCAATAAGACACTGTGCTAGGCGGCCAAAGAGCACGAACTTAGCGTCAGCTGTGTCATCACCTGCCACAACGCTAAGCTTGAACCTAGGTGATGCTCCCACAAGAGGAGGGCATGACTCATTCTGGCACTTGTATGCGTTTCCATATGGCCTTGCTGTTCTCCTGCATATATCACATGCAGTGTACCACCAAGAGTACTCCATGTCTATTTTCTTGATGACAACAGTAACCAAGAATTCATGTTTCTGCACAAAAGAGGTATGAAACAATGGTTATAGCTCATTCTAGGGAATTTGGATAGCAAAAGTGTATAAATCACACAATGTATCTTGAATTCGAAAGGATTCAGATCCTTAATTTGGATAATCGTCTTGGGCTCAGCATTGCTATAAGCAGGTGCTGCAGGAGGTAGATCAGTCCACTCTATAGGACTATAGGTTGCTTAGATGCTGTTTCTCAGAGAGATGACCTCAGGTGTGTCTGCGTTAATGTACCACTTGCAGGCTGAGTTACCTGATAAAGAGACATCGCCATAGCCCTTCACAAGGGTGCCAACGAAGATTACTATCTGTGGTTCTTTCTGACCAGCAACAAACACCTCATCGGCAGGAAAGCTTGTTGCACGTTCCCCCCAAAGCGCCACATTCAAGATTGCATTGCTATAGGAAATATGCAGTAACAGATGCATGAAAACCAAAATGCAGGTGGCCAGATGTATCTGGCGTATCTTTTGGCTGTGTTAGAGGTATAATGGTTGTATTAAGAATCTCTGTGAAGATAAGGGGAAAGTTGTATCTCTTTTGGTAATTGGTTAGCTCAGATAAAAGGGAACCATATAAACAAATCAAGATTAAGTTAGTCCTGATGAATCTATTTTATTTTAGTATGCAAGAGTTGGGGCTAACTCAGTGTTGCGGATGAAGACACTCCTCTTTACGGTGCCTTGAAGCGGAGTCACGGGCGACAGCTGAGTAATAATTCCAATGATATCTGTGAATGAGTCTTTCTTGCCAACACGTGAGCGAAGACCGCCAAATGGTGAGAGTGAATAAGTATACAAAGGAATCTCAGCTGGTGGATCGACACGCTCCTCTAGTTTAGTCCACCTTGTGAAATAGATGGACATGCAGTTGTCGACTGGTTTGTACTGCCTGTTACACTTCCTCACACGGAAGTACTTAATGTAGTACACCTTGCCTTCAGTGATGATTGGCCTGAATATCTCATCACATGGGGGATAAATCTGAGCAGCAATGCTAGTCCCCTTCTCATCAATCAGGACCAAGCCAAAGTGAAGAATCTTGTCATCATCCTTTTGGTCACAGAAAGCCCAAAATCGCGAAACCCGAACACAAATGCGCTCGTTGTCGTCACCAAGGGAGAGATCAGAGAGCAGGGTGTGTCCCATCTCGTAGGATCGAGGAACGCGTGCAGACATGGGCTAGCGAAGAAGCCAATGGGCAGAGTCACCTCGGCCGAGCGTCCTGGCCTACAGCGCGAACCCCACCAAGACCTTCGAGCGAAATGAACAGGGCGTCGAGGAGCTAAAGTCGTACACTAGATGAGCGGGGCAAATCCTAAGTGTCGACGCAGTATCCACAATGTCCCCTGGTGCTCGCCATGTGCGCAACAGCGAAAAGGGGCAAAACGGGAGCAAAGCACACCAACGAACCGAACCAGCAACAGCCTCGAGCAGAACTAACGAACCGGGTATGAAGAGGAGAAGGAAAGGCTAAGACCATGACGTGGGCATCGGTGCTCGCGCGCACGCCGGTACGGTGTGTATGGACGTCGATTTGATGGTGCCTCACGCGGTGGCGTAGCGCGCGGCGCTCACAAAAAAACATGGCATCATACAGCTATAACCTCCCGGATGGGCATAGTGTATGGCAGGTGGGGAAGCACACGAAATTGACCCCACCTATCGCTGACTGCAACGAATAGATGCATGTGCATCAGGATTTTTGTGGTATTAACCAGCGGATAATTTCTCAGCTACTTTCAGTGGTGTTAGGTGAACGTGCTCCTAGCGCACGGAACACGCATATAGGAAAGCACCTGTGTGATGGGGGACCATGGTGCACCACGTTGGTAGGAGAACCACGAATAGACGTGTCTCACACAGAGAGACAGTGCATTGTCCTGAGTAAAAGTGGGCGGTGTACCAAAAGGAAAGCCTGTCAGGCAGGGAAGGAACTACCTAGCACCGGCGCACCATGGACCAAAGTGACTACCAGGTGGGCCATCGAGCGTCAGCTCCGTTGGTAGACAGGCACCCACGCACATCCCCACAGCGAACCAGGCACAGAGGGGAGCACAGCACAGACCATATAGAGCACAACAAACCTGGTGATGTCTCCAACCAAAAGTGAATATGGGAAGCCAACCAATATCATCATATCTGTAATCGGCAAACAGCGCTGGCGGCGCAGAACGGCGGAGCTTGGTGCCGCACGATGGCAAAGACTCGAGCTTGAACAGAAGGGGAACCAGCAAATCGAGACCAGAACATCGATCGATCCCCACACCATCGATTTGGCATGCCATCAGCAAGAAAGGAGGGAAGATAAGAGAGAAAAGGAATCAAGACCAGAACATCGATCCCCCACACCATTGATTTGGCGCCGCACCGTCCAATCACCTGGTCGACTGTAATCATGGAGGAAGAAAGGAGGGAAAAGGTGGCTGGGTGACGGCGGCGGGGATGGGCGGAGGAAGAAAGGCGGAGATGGGCGGGGGACAGCGTGAGCGATGCCACCCGCGGAAGACGATTGCGGCGAGGAGAAGCGAGGAAGGGTGAACAGTGACGGCTAGGATTTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0009400.1 | 1 | 6761195 | A | G |
| Osa01LNT0009400.1 | 1 | 6743626 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0009400.1 | osa-miR5534a | Cleavage | 3.5 | 19.745 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR5534b | Cleavage | 4.0 | 19.745 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR812r | Cleavage | 4.5 | 19.117 | 1 | 24 |
| Osa01LNT0009400.1 | osa-miR5797 | Cleavage | 4.5 | 16.53 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR5179 | Translation | 4.0 | 22.338 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR160a-5p | Translation | 5.0 | 19.431 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR160b-5p | Translation | 5.0 | 19.431 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR160c-5p | Translation | 5.0 | 19.431 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR160d-5p | Translation | 5.0 | 19.431 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR160e-5p | Translation | 5.0 | 19.431 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR166k-5p | Translation | 5.0 | 12.734 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR168b | Cleavage | 3.5 | 16.944 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR169f.2 | Translation | 4.0 | 18.844 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR169p | Cleavage | 4.0 | 19.379 | 1 | 22 |
| Osa01LNT0009400.1 | osa-miR1855 | Translation | 4.0 | 17.908 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR1428e-3p | Cleavage | 5.0 | 12.239 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR1860-5p | Translation | 4.5 | 23.541 | 1 | 21 |
| Osa01LNT0009400.1 | osa-miR2104 | Cleavage | 4.5 | 14.192 | 1 | 22 |
| Osa01LNT0009400.1 | osa-miR5150-3p | Cleavage | 5.0 | 23.162 | 1 | 24 |
| Osa01LNT0009400.1 | osa-miR5155 | Cleavage | 5.0 | 20.638 | 1 | 24 |
| Osa01LNT0009400.1 | osa-miR5501 | Cleavage | 4.0 | 14.93 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0009400.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0009400.1 | 1 | gp1 | Morphological trait | Panicle/flower | RG532 | RM259 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Other soil stress tolerance | C955 | C885 |
| Osa01LNT0009400.1 | 1 | An9 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0009400.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0009400.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0009400.1 | 1 | Rf | Physiological trait | Sterility | nan | nan |
| Osa01LNT0009400.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0009400.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0009400.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0009400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)