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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa12LNT0113300.1

GCCATGCCAGTCAACACCCAAGTTATACAGTATAGCTCTTATACAACGAGCAAAGATACACATGAAAGAATTTATACGAAAAAAATGACCACCAGGGAACTGCACTTTTGCAATCCTAAAGTGGTAAATGTGAAGAAGATCCATCCAAATCGTGTAAAAGGTGAAGGAATCAACATACACCATTGTTAACCAGGGATCTACTTCAAAGGTATCATGCTGGTGGCCTGCTACCATCTTTAGCTACTATGAAGTATTGCTTAAAATCTGGCACAAAAACATTTCATCCTATCTCCATTTTGGAATTAATGTAGTGCCACCATGCCACCCTTACTATACTCAATTCATTATAATGCTGCATCAGATTTTATCTCACTCTAACCCTCTTTGTTCCCGAAAGTTCTGTTGCTCCAAAATCCCAGAAATGTAGAATGTGGTGAATCTCATGTTACTGTTATTAATGTATATTGCATTCTGTCATAAACCTTTCCCCGTTGGTCATATACTTCCTCCAGTAGCCCTTATAATCATGTATGCCCAAATCAAGCCAAGGTTTCATGACACCATTGTAGTGTAGAGTAACAGACCTTTTTATATCGGTTTGACTAACTCCATAATCATGTCCAAGACCTGATTGGACCCATGAATCTTCCAAAGGATATATCAAATCTTGAAAGACAAGTAAGCTTATGGGAAGTACTTTAAGTGGAAATGATGTCACACTGTCCTTTTGCAACTTTTGAAGCAATTGTTCATACCGACTGGTAATGTGGAGATCCCTCCATTTTTTCAGTTCAACAACATTCAGACCAGATAACCACACACATGAATTGTTGTCAAAATTACGTTCCTCGGTGTAAGCCTTCAATTGTCCTAATTTAACTTCACAGAACTGAATAGCTCCCACCACTTTACCACCCATATTGAGGTTCCACAGAGATGACAAGTCTTTCTGGACAATCAAATCATCATCTAGAACTACAACTCTATTCAAGCTAGGAAGAAGGTCAGGCAGGAGGAAATGTGAATGGCCAAAAGTAGAAATGTACTCAGTTTTCATTTGCTTCTGGAAAGATTGAGAATGATTACGAAACGTGACACGGAATTCCTCAGCAGGTCGTAACAGTTTCATATCATGAAAATCAACATCCTTAGAGAGCTTCTGGTGATCCTCAATGTCAGTTACATGTACAGTTGCTTCCAAATACATATTTCTGTCAAACCAATGCTTCATCGCATAAAAATTTTGTGAATCGGTGAACAAATGGAAAACAATGCTACCCGAATCCTTGGAGTTCATAACTGTTGAATTAATTGTAGTCGAAACTGCAAGCACATTCTTGGAGAATATCACATAGTGATGGAAGGTGGGGTCTTCAAGTTTCTGCTTGTTTGACTGGACCGTATGAATAGACGTTGATTTGAAATATTCTACAGTCAATCTCATGTTCAAGCAATGGTGAGTTTTTGGCATAGTTTGTACCCCAAGATGATAGAGAAATGCACTCTGCCTTGTATGGAAATAAGCTTCATCTTCAGTTATATCAAGTAGCTGCCTAAGTTTCCGTTCAACACTTGTGCAGCCGACTTCACAAGACTTGGCTCTTTCAATTGTGTGCTCCATTTTCTCTAGCTTCTTTGCAAAAAATGGTGGAAGATCAGCATCTGCAATGGTGTCACTGAGCATGCGTTCATGCTCTTGGATGTTTTGTTTCAGTTCACGTGTGAATGTTTCCTGGTTCTTCAGCTTTGCAATACTAGGATAGTGAGCTCTTGCCATAAAAAGTTGATCCTTAAGCCTCTTCACAATAAAATCTTTCATCACTTCCTTATATTCAACAGACCAGAGACAGTAGATACCATATTCAAGTTCACAGGATTTGGGGTTCTCCTCATGCTCGACTTCTTGGTTCTCTTTCTTATCAATA

Coding Potentia
Explanation CPC Score
noncoding -1.16204
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0113300.1 12 1071803 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0113300.1 osa-miR5825 Cleavage 4.0 21.604 1 24
Osa12LNT0113300.1 osa-miR164a Cleavage 4.5 15.609 1 21
Osa12LNT0113300.1 osa-miR164b Cleavage 4.5 15.609 1 21
Osa12LNT0113300.1 osa-miR164d Cleavage 4.5 15.609 1 21
Osa12LNT0113300.1 osa-miR164f Cleavage 4.5 15.609 1 21
Osa12LNT0113300.1 osa-miR5486 Translation 5.0 22.482 1 21
Osa12LNT0113300.1 osa-miR5487 Translation 4.5 18.18 1 21
Osa12LNT0113300.1 osa-miR5494 Translation 5.0 16.744 1 21
Osa12LNT0113300.1 osa-miR164c Cleavage 4.5 15.609 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0113300.1 12 gy12 Morphological trait Seed RG869 RG98
Osa12LNT0113300.1 12 nan Physiological trait Eating quality RM20 RM101
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus