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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0113400.1

AAAAAATACGGGATGTATTAACATTCAGAGGGCATAGCAAATACCATTGCTTGCTGCATCACATCAGGCTCTGATCTGAGTATGGATACACTGTCAGAAACAAATCTGGACGGAGGCAAAAGGAATGACAACAATGCTTGAAGCGACAGTTGTAGGAAACAATGATCACAGCTTTATATTCCAACAACTGTACTACCGTACATACTCTATTTTTTTTTTCCGGGGGATACATACTTGCATTGTGAAACTCAAGGGCAAGAGACTGGCAGATATTCAGATGTTTCCAACCTGCACTGTGAAGCTCTAAGCTTATGCCATCCTGGAAGCTCGATGCTGTAGATTTTAGAGGTGCAGGCATCACTACATGTCTAGCCGGTTTTCGTGTTCTTCTCAGCCTTTTTGAACTGCCGCCCTTTCTTTCTATCATTACTTGATGGCTTGTCAAACAATTCCTTGTATTTCTCAAGCAATTCCTTTTTCTCCTCTACTAGACCAAGCATTTCATATGTGTCTTCAACTTTCCGTACAATATCTTTGCTTGGAGGTTTACGACCACATGCTTCAAGATTCTTGAAGAGCTTGACAAGCGTATCTAGCCTATTATTTCTGTAGTAAATACCCAACATAAGACGGCAAAACCGCCATGGAACTGATTGTAGATCATGGGCTATCTTCAACTCCCAGATTCTGCAAGCTTCATCTGCTCTGTTGTCCTTCTCAAGCGCACACACTAATTGCTCATATGTTCTGATAGTCTTCCCTTGTCCTTTACTCAGCATCCATTTTATCACCTGGACGATTCTATGCCACTGTTCCTCCTTTTCAAGAGCTACAAGTGCTTGCTTTAACGAGGCCACAGGAAACTCCTGTTCAAAGGCAACCCAAGCATCCAGAGTGCTGTAAACACCTTCTTTTGAATCTTCCAGGTCAAGCAGCTACAAGTTATAAAAATTATTGATTGGTCTCTACCAGGAAGCAATTATAAACAAAACCTAATTATCATAGAGACTTCATGCTGTCAAATAGTAAACTAGACAATACGAAAACTAGCTGTGCATACAGTGTTGACAAGATATTTCCTTTTCTCTGCCGATTATAAACAAAACCTAATTATCATAGAGACTTCATGCTGTCAAATAGTAAACTAGACAATACGAAAACTAGCTGTGCATACAGTGTTGACAAGAAATTTCCTTTTCTCTGCCGATGATAGATTTTTCCCAACTGGCCCTTGTTTCAATTCCTTTGTACTGTTTTGTATGTGTTTGATGATTGCAACATCATCCTTCACAAGGCTTGGTTTCAACTCCCTTGATTGATACCCCCGATCGTTGGAAACTTTATTACTTGTATCTACAGAGAAATTCCTGGTAGAATGGTTTCTACACCAGCCGGCTATGAACTCAATATGTGAACTCTGGATCGAGTATACGGCGAGGTTGGCTACGGGCAGTCGTTGGGAGGATCGCCGGAGGTGTCCCAACATCGGGGCGGCGGCGGCGGCGGAAGGGCTCCC

Coding Potentia
Explanation CPC Score
noncoding -1.28877
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0113400.1 12 1094283 A G
Osa12LNT0113400.1 12 1094643 C T
Osa12LNT0113400.1 12 1095374 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0113400.1 osa-miR5820 Cleavage 5.0 15.496 1 21
Osa12LNT0113400.1 osa-miR5829 Translation 5.0 8.433 1 24
Osa12LNT0113400.1 osa-miR6246 Translation 4.5 15.642 1 23
Osa12LNT0113400.1 osa-miR444a-3p.2 Translation 4.0 17.687 1 21
Osa12LNT0113400.1 osa-miR1432-5p Translation 4.5 16.825 1 21
Osa12LNT0113400.1 osa-miR444b.2 Cleavage 3.5 17.687 1 21
Osa12LNT0113400.1 osa-miR444c.2 Cleavage 3.5 17.687 1 21
Osa12LNT0113400.1 osa-miR444d.2 Translation 4.0 17.687 1 21
Osa12LNT0113400.1 osa-miR2099-5p Cleavage 5.0 18.402 1 22
Osa12LNT0113400.1 osa-miR2868 Cleavage 4.0 11.37 1 20
Osa12LNT0113400.1 osa-miR444f Cleavage 3.0 17.687 1 21
Osa12LNT0113400.1 osa-miR444e Translation 4.0 17.687 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0113400.1 12 nan Physiological trait Eating quality RM20 RM101
Osa12LNT0113400.1 12 gy12 Morphological trait Seed RG869 RG98
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus