© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0114600.1
GCGGATGCAAAGCTTCAGAATTTCCTTCGGATGCAACCAGTAATGAAACGCTCATCCTATTACATGGTGATTCCAATTTGCGAGAATAACCCACCTTCCCTGGTGCTCGCGCCCTTTATACATGCGCAGCCTTGTTTTTGATATTTACTATGCCGATTTAACCTCGAGAGCTTCACTTAGTCCATCTCCATGGCTAATCCAGTGGGATCTTCGAAGTCTTTGAGAATATCCATGCATTGCTTCAAAAATGCCTTTGCTTGCTCGCTTTTTTCCGACTCACAAAGTTCAGCAAGTTCGCCTGAGAACTTGGGCCCTTTTCTGTCAACCAATGGAAAGTCTCTATACAATTTGCTCAACTCAAGGAGACACTCGGAAGCAGCGGTGTGAACCTGAGCAATCTTAACTAAGCGTATGACATCCACAACTTTTGGTGCTGTTGAATGAAATAACTCCTCAACCAAGTAAGTTGTTTCCTCAGGCCAAGTGTTATTACCATCTGAATTCTGGAATTTATAGCACAACTCTTTGATACACAAGAACGATGACAACTTAATCTGCCAACTCTCCTCGGGGGATAGAGAATTTAAAATAATTTCCAGGATATTCTTCCTTTGGTTGATAATATCTTGCAGGAAAGCAACAGTGATTGAAGATGCTACACAGTTGAGCACCTTATCAAGAGAAACAGAAACACCTTCAGTTTCATCTTGCTCAGCACTAGAGGATGCAGTGAGTGAAGATGAGTTCCTTGTTTTACAAATGACAGATCGATTAGAAACCTCATACAGCATAGGAAAAACAATATTGAAGAATCCTGGATCTTTGAATGCTGTAATCACTTGCTGCAAACACGAGAAAGCTGCTTCACGGTACAATTTTGACTTCCTACTGCATGCAGCACAAACAGCATTTAGAATAACACTAGGCATGCCAGAGTCTTCTGCACTCATAGCAGTATGGCAGCTCGAACAAAGTGCAGCGAGTGCATCCAGAATAGCATCTTTTCCCTCCCAAAATCGACCAGGTAGTTCTTTCAAAAGTGATTCAAGAATATTATTGTGGTGCACAGACAGGGATTCTCCTAGAGCATCACATAGTTTTTTTATAGCCTTGGCTGACTTTCTCTTCCCAGCCCATGATGACGAGGACATGGAATCACACAAAAGAGAGATAATTTCTGGTAAGTATAACTGTAGGGTTACTCTTTCGCTACTAGGAATATCCTCCCAAAGTTCTCCATACAATGCACCGATGTCTTTGTCATCATCAAATCTTGAAGCAAAAATTACTGGGAGAACAACTGCATTGTATCCACTAAGAATATCTGCTGCATTGCTTAAATAAGATTTAATAAGAATTGCAGCAGACAACTGAGCATTTTTTTCACCTAAATGCAGAGAAGTGGTATCTTCAATAAGTTTCTGAGCCTGAGAAGGGCTGGCATATTTTAAGACTGCAGCACAAGATGATGCAAAGGCCCTTTTAGCTGCAGAACTCTTTTCCTCCAGAACAGCACTATACAGTAACCTCAGCAATGTTGCCGCATATGGCTTGATTTCAACCATGACCTTCTGTACTAACAAGGTGATGAAGCTAGCAACACCAACCCTTGTATTAAGACCAACAGCAGATTTAACCATTTGAGCCAGACGAGGAACTAAAAGATCCAGTGATTCTTTGTCAAAAACTTTTAAACAGATATCAAGGGTTTCCCACATCGGAGAATCTTTAGCCACAGCTATACGCAAGCTCTCAAGCTTTTCAGTTTGGATGCCAGCATTTCCTGCATGCATCTCAACATAGTTCAATCTTTGATCCTCCAGACTTGATAAGCATTCGAGCATACAGCTGACAAGTTCTGACAGATGTGGCTTAAGTGCAGGGCCAGCCCCCTTAGCAAGCTTCATAACCAAACTTATAGATGCCTTTTGAACACTTGAAACTTTACTGAGTATGCCTTCAGAAAGCAAGTATGGCAGTACAATGTTCATTGTTTCATTTGCATCAGATGAAGTAGTAAGTGACACATCACAGAGCCTAACTGTCAACAAGCTTACAGCTCGGCACAAACTGTCACCAGCATTTCGCACAGTTTCCTTAATATCATCCATTGCTCGGAAGGTGGTAATCCATATTTTTCTCAAATGCTTAGAAACCTGACCATATCTTCGACCTTGAATAATGTCTGCAAGTGCAAGACATGAAGCTTCACGTGAACGCCAAAGCCTCGATCCAGATTGAACCAATAAATCTTCTACTATTAGATCATAATGTTCATCTATTGTTTTTTTTGGATCTGCAACAATTAATTTCCATATGTGTGCCATAGAATCCTGGATGTTCTTATCAGGATCATATTGGTAACGGACAAGCCTGGGAATTAAGGTATGCAGATGAGGCTGAAGTGCCTCACCAGCTTGCTTGGCTATCTTGGAAAACCCAAAAGCAGCACCCCTCTTGGAATTGATAGCAGCCTGATAGTTAGCTAGATCCATAAACTTGTATATTAAGTCAGGTTGGCCCATCTCGTTGGCAAGGCTACAAAGTTCCTTGTATGTGCTAAGCTTTCCTCCAGTAGGATTATTGCCAATAGTTCCTTCTTGAAAAACCTCTGAATCCTCCATCAGCTTGATGGCCCTTTTCTTTTTTGCTGCGCCAGACAGTGTATTCACGAGAGCATGAACCAGCTGCTCCTTCATAGATGCATCACCAAGCTCATATACAATACTCATGCCTTGGGATGCCAGATCTTGTGTAAGATCATTCTGATCACCAAGAAGGTGGGTAAGGGCTTCCTGAATTTGTGGAAGTAGTTCAAGGATCTTTGGATGCTGACCACAGTACATTGTAAGTGAGACCAACCAGACAGTACCTGCGCACCTTTCCTCTTTTCTACTGCTATAAATTAGTGTATCAAATAACCGTTTTATAATTTCTTCTCGAGCCATTGCGTGTGCTTCTTCACAATCACTTCCTTTATTAGAGTTACTCGAGACAAGTAGGGGTGCATCACCAGTAAGATAGTTTGTGGCCTGGGAAAGGGAGACAAAGTTCGTTTCTAGTATTACATCTGTGGTCACAGGAACTTCCCCCCATATAAAAGATAGGGCCTCCCCGGCTGCAAAAAGAACATCTTCCACCTTAGAGCGTGAAAGACTAAAAATTAAGTCCAATGCATTATTCAGGTGTGCAAATGACAACTCGTTCCAAGATAGGTGTCCCAGCGATATCAAAATCTTTTGTTTAGCTTTAGTATCATTTTCTGAAAGCAGCTTAGCCAGCTTCTCATTCAGGATTGTTAAAAGTGCAGCTTGAGAGGAATTTCGATTAATAGAAGGCAATAAACAACGGAGACCAATATGACCAAGAGCTTCCATCGCAGTGGATGCCAATGCTGAACCCTCAGACTCGACAACTTTTACAAGAACATCAATTGATTTCTGCACTATTTCTTCAGTTATATAAGATTCTTTTAAACAACCAGCAGTTATATACCCAATTGCACATAACAATCCATGGTAATTTTCGAATCTTGATGGGCGATTTTGATCAAATGTTGAAGTGAGCTCAGAGAGAAGATCCAGTGCAGCAGTGCTTGAAAGGGCTGAAGAAGTAATACCAAGCAGACGTGAAGTTGCTTCACGAGCATCAGCATCAACATGGCCCAGTAAAGTTCTTAGCCAAAGTAAACGGTTCACATAGCGCGATGACACCAACTTTGGTTGACGAGAGGAAATATCGACCAATGACTTCAAGGCCAATGCATGAAGTTCACTAGATCCTTCATATGACATGGCATGTTCTAAAATGATACACAATTTTGATACTGGACAATTAGATAGATCTTCTTGAAGAAAATCCGAGCCATCACTTTTCTGAAAGCACTTCATTAGAAACTTTATCATTGCAAGAAATGTTTTTGTTGGGAAAAGCAATTTTCCGTTCCTCTGCTCATCACAGTGTAGCAACTGAGGCTGTTGGCTGTATACATAATTTACCATGTCTGCAATATCAGGATAGTTGGAATCAGTTGCTATTGCAGATGACTCCCTTTCATCATTTAACAGATTCAGACCAGTTAAAGCCATTTCCCTTATGTCCAGTTTTACATCTGAAGCACCAAGCATGCAAATGTATCGGCTTGGGCAGTGCTTCATATCGTATAGTGTTGTTGCCCATCTTACAGCAGAAAATCGGACCTCACTTTGCTCCATTTGAGAATTTTCCAAGAGAAGTGCCTCAAGATCCTTCAATATTACAACCGAAGCACCCTTATATGCTGTAGCAAGGGCAGTAGCTGCCTCCTGAATTGTCAAACGAAGAGATTGCTCCTCTAATCTTAAAGCAGTAAAGAGTCGTATAGCCATGTCAGTTTTGTTGCTGAATAAATTAGGCATGCGAGTGGCAAGCAAACCAATTGCCTGGTATGCAAATATTTTAATATCCCTACTGGAAGAATCTGCTTCAGTAGTGGAAGAACCATCAAGTGAACGTAATATTCCACTGAGAATGACTGGACCAATTAACTTTAGCTGGTCATTTGATGTTTGAAAACCCAGACAGTGAACTCCATCCCTAACTGCTTCAGCCTTGAAGTAGTCCCGTTTCCATAGATGCAGCCAAAGATGCACTGAAGTGTGTACGGGAATGCGTTTGCTGCAGCAATCGATCGGCAGAAAACACCCATAAGGCGGACTCGCAGTGAACTATGTGCTGGGGCGACTTTCAGCTCTGCAGCTATATTTTCTGCACTTGCAGTACCATTGAACAGTGTGAACAGTTTCTTCATAAGGTTGGAATCTTCTAGGTTCACAGCTGAAGCTTTGCGCTTTAATAACTCCTCTCCTCTCTTAGTAACTGACTCTTGACTATCCGAAGCAGCAGCTAAATAAAGAGGGTAAACAATCTCTGGTGCCAACTGCATAGCTTCAATGACGTTCAAGATTCCTAGCT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0114600.1 | 12 | 1679332 | A | C |
| Osa12LNT0114600.1 | 12 | 1680700 | A | C |
| Osa12LNT0114600.1 | 12 | 1680722 | A | T |
| Osa12LNT0114600.1 | 12 | 1682343 | A | G |
| Osa12LNT0114600.1 | 12 | 1682945 | C | T |
| Osa12LNT0114600.1 | 12 | 1684947 | A | C |
| Osa12LNT0114600.1 | 12 | 1685256 | C | T |
| Osa12LNT0114600.1 | 12 | 1685883 | G | C |
| Osa12LNT0114600.1 | 12 | 1687511 | A | G |
| Osa12LNT0114600.1 | 12 | 1688993 | A | G |
| Osa12LNT0114600.1 | 12 | 1689039 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0114600.1 | osa-miR5540 | Translation | 5.0 | 15.158 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5542 | Translation | 4.5 | 14.656 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5797 | Translation | 4.0 | 10.236 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR812t | Cleavage | 5.0 | 19.643 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR812t | Translation | 4.0 | 20.134 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR812u | Cleavage | 5.0 | 19.643 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR812u | Translation | 4.0 | 20.134 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR5815 | Translation | 4.0 | 18.451 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR5179 | Cleavage | 5.0 | 14.518 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR1440b | Cleavage | 5.0 | 10.424 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR6253 | Cleavage | 5.0 | 11.087 | 1 | 22 |
| Osa12LNT0114600.1 | osa-miR6253 | Translation | 4.5 | 14.846 | 1 | 22 |
| Osa12LNT0114600.1 | osa-miR6255 | Cleavage | 3.0 | 17.313 | 1 | 22 |
| Osa12LNT0114600.1 | osa-miR166k-5p | Cleavage | 3.5 | 13.636 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR435 | Cleavage | 4.0 | 11.152 | 1 | 20 |
| Osa12LNT0114600.1 | osa-miR444b.2 | Translation | 4.5 | 14.555 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR444c.2 | Translation | 4.5 | 14.555 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR444d.3 | Cleavage | 3.5 | 14.844 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR1850.1 | Cleavage | 4.5 | 13.903 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR1852 | Translation | 5.0 | 13.762 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR1853-5p | Translation | 4.5 | 22.005 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR1882e-3p | Translation | 5.0 | 12.116 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR2092-5p | Translation | 4.5 | 18.545 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR2093-3p | Translation | 5.0 | 11.862 | 1 | 20 |
| Osa12LNT0114600.1 | osa-miR2877 | Translation | 4.0 | 16.43 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR2922 | Cleavage | 5.0 | 19.079 | 1 | 20 |
| Osa12LNT0114600.1 | osa-miR812n-3p | Cleavage | 5.0 | 19.643 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR812n-3p | Translation | 4.0 | 20.134 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR2873b | Translation | 4.0 | 15.007 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5144-5p | Cleavage | 5.0 | 18.661 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5144-5p | Translation | 5.0 | 7.516 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5150-3p | Translation | 4.5 | 24.04 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR5157a-3p | Cleavage | 3.5 | 12.917 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR5157b-3p | Cleavage | 3.5 | 12.917 | 1 | 24 |
| Osa12LNT0114600.1 | osa-miR5499 | Cleavage | 4.5 | 12.355 | 1 | 21 |
| Osa12LNT0114600.1 | osa-miR5500 | Translation | 4.5 | 9.805 | 1 | 22 |
| Osa12LNT0114600.1 | osa-miR5500 | Translation | 4.5 | 11.313 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0114600.1 | 12 | Pi-4(t) | Resistance or Tolerance | Blast resistance | nan | nan |
| Osa12LNT0114600.1 | 12 | gy12 | Morphological trait | Seed | RG869 | RG98 |
| Osa12LNT0114600.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0114600.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0114600.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0114600.1 | 12 | nan | Physiological trait | Eating quality | RM20 | RM101 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)