Transcript

Sequence

>Osa12LNT0114700.1

CTTTCTTGATGTAAGTGTGTCACCTTTTAGTGGCTGCTTTCCAGTAACACGATCTGATTGAGCAACCGAAAGTCCAGCCGGGCATCCAACACCTTGAGGTGGTGTTTGATACACTACTGTGTGAAAACAGAAGTCAGCGAAGACTAGATCATCATTAGATCCACTTATGGATTGATATTTTGAAGCAACATTGTCACCCACCTTATGTGTGTTACATTCACCAATAGCCTTCACCACAAGTCTCAAGATGATTCCCTGATGCTGCTCTGTAACATTTGATATGTTGATTAAAAGATCAGGTGCTATGCTTCCCTTGTCCT

Coding Potentia

Explanation	CPC Score
noncoding	-1.18251

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0114700.1	12	1690098	G	C

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0114700.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0114700.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0114700.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0114700.1	12	nan	Physiological trait	Eating quality	RM20	RM101
Osa12LNT0114700.1	12	Pi-4(t)	Resistance or Tolerance	Blast resistance	nan	nan
Osa12LNT0114700.1	12	gy12	Morphological trait	Seed	RG869	RG98

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus