>Osa12LNT0115500.1

GGTAATGTTTTTATTTCATCATAGAACAAAGCGAATTTCCTACTGTTCTATTATAAAAATGGAGATACCACATATTACCGCTGTTCCAGATCGAAGGCATGGTCATCCTCATCTACTTCTGTTCCAGATTGAACTGTACAGGGCCAACCTTAAATGAACGCTGGAGATTGCAACCGCCAGGTGTTCATGGCACTGTAATTCCCAGTACACATACAACTTTACACCTCCCGTGGGATAAACTAACAAAAGTGGCTAATAGCTTCTTCCCACTAGGTAGATCATCATCATAAGGCCCGCCATCATCTGTTTCATGATTCATCTTTCTCGCAAGTATCTTATTAATTTTGTGGAGATCATTTGTGAGCTTCTGGTCCTTGTTCTGCTTCCTCGTCTTCCTGCAATCCTGCATTTCCCTCCAAACAGGAATGCAGCCTTTGGCATGGCTTCCGGTCGTTATATTTGGCCCACTCCTCAGTCCCACCCATGTCCATCTTCGACTAATCATCCTCATCATCGCTCCCTGAAATAAAATTAGGATCTTTCTCCATCCAGTGCATCCTCTTCCCTTAGCCGCTCAAGCCTTCAATTATCATGTTTGAAACAGAACCAAAGAACTCTTTATCTGCTTGAGTTATCAAGCTTTGGTTCCTGGGATATAGATGGGTCTGCTTTGTTGCATGTACTGTTCCGGATAGGCCATCTGTTGCTCACCAAACTGATAGCCTGACAACTCTTCTTGATATCCAGCAGTTACCATTCGGACGGTTGTGGCCAATCTTGAGCAGGGTCAGATGGTGGGACGGGCTTGTAGACAGGTTCAGCAAAACAGGATTGCTTCTAATGGTTATGTGGAGACTCATCCATACCTTCAGAGACAAGGCTGATTTATTTGTTAGCAGAATAGTCAACTTCATCTCCAACAAAATTGTAATCTTCATCTTCTCTAGCAATAGGCTGTTTCTCACTCCTAGTTTGGCCAGGTCCAGCTACCTCATCGTAGTATAGCAAGCATAACAAGAATCAAGATACCTTGAGTCCCTTTCCTTTATCTTTTTCTTTAAGACTTCCCCAGATGATCCAAGTCAAAGGTATGACATGATTTTAGCAATCCTCTGGAACAGGGCAATCAGCTTTGCTCCTGTGAAGAGTTGTCGGAATATCATTGGTAAGTCCATCCTCCTGGTTTCATTAATGAAATTAATCACCCTACCACTTAAACCAATAGTTCAAATCAAAGAAGCGAATGATGAAAAATTCTTTCATCATTCATATCTTTCTTCTCTTGTTTGCATGTTATGAAGTGAAGTGGGAGCTTGAGCATGTTGATCGTACTGCACTCCAGGTTAAAGCAGAGAAACAAACAACAAAACACATCATAGAATGCAACATAGTCATGCAATATGAGTACTGTAAAAGCCAATAAACACAAGCAATGCTATCATTTACATGCTAGTATAGAATAGATAAATTAGAAATTGAAATAGCAGTAATGTTTTTTTACAATATAAAAGCACCATGGTTAGTACAGATGAACATGGATGAGTGATGAAAATAAAATGAAGGAAAATGGGAGAAGAGCCAATGCCTATAATTTGCACTTCGCTCTACATGACTATTCTGTCTGCAGTAACATGTAATCAACCACACACTCACGCGCATGCAATCATGTAAGCACTAAAAATGGGAACATTTGAAGGAGCTACCATATTGTAAATAAATGTCATGCGATCAGGAAGAAGCATTTCATTTAACTTTATGATGCTTTGTGGCTTTATGATCCATTGATAGACGTAGTGCAATGAACCAAGAATGGATTTAGTGTCCATATTATATTATATGGTCCATCACATAAGAAGCAAACATCAATTAAAACTAAAAGGAAATATACCTTTACAGTTGCCGTGCTGAATGAGATGCCTGATCTTCTTTTGTTGCCCTCAACAACACAAGTGCACAGGCTAAATATATAGACCATCTACTTAATAACTAACTTACAAAGGTGTCTGCGTCCAGACAAGGGTGAAGGACATGAGGCGATAATTTCATATTGGTATAGCTCAAATCAAGAGATGCATGCAACCAATTATTGTATTATTCTACAAGGTGGTAATGATGATCCTCACAATAGTGTACATGAAATAATGTTTCACTAAGAATGATCCAGCAGCCACTGTAAAACATATGTCTCATTTTTATCACTCGGAATAAAAATAAAGAAGGCATTAAAGAAGCATCACCATACAAATCCAACTACTTAGTTGTGCATAATGCTCTCAAGAAACAGGTTGGAAGAATCATGAATAACAGAATAATTTGGCTTGGCAGTCCAACAAGAGAAAAATGGATCTCTCTTAATCACCTCCAATTAAAGAAAGAGGACTGGCCCTAAAAGAGGTTGACAACTTGTTGTGTCATAAATAAACAATGGAATCAACTCCGTAATTTCCTATACTGAAGAAATATGACAGCAGTAATCACTCTTACCAATATATTACAGCATTTGAAATGAACCATGAATCTGACAGGTTGTCCACAATACTACGGATTCTAAACTATCAAGAAAAGGTATGATCAAATGGTATGGAACACTGAGACTAAAACAATAGTATGGTGGGGAGTACCTTGGCTGTGTATCTTTCCCACCCTCTGTGTCAGGCCTACTTTTCTATTTCACTTAGTACTTTGTGAAGTAGAGCATAGTCCAATCCAATGACCAGATGTGTATTTGCATATCACCTCCAAGATATTTGTTTTTCTCAATAGATATTCTGTGTGCATCTTAAATCAGTTCCAGGAGGTGCCACAGCATGAAATGAACCAAGCTCTGTATGTTCATACTCGGGGTTTTGATCTCAAGGCACTCCTTAGCACGATCATGATACCTGGGTGTCTCTGGTTCTTCCTTTTTTTTTACCAGGAAACAGTAGGGGAGGCCCCTACGGTATATTAAAATTATATAAAAGAGTAAAGATTACAGGGAATTTACAAAATGTCTATCCATGATTGAACAAAAAGTTTTTTATCATCTCTAAGTCCAACTAAATGTAGACTTAGGTCTGCCTTGAAAGCTCGCTTCCAGCTTGAAGTGGTAGGTAAAACGTTGTTGAAAACTAAGTTATTCAGGTGTTTCCAAATATTCCAGGCAGCAAGAAGAAAAACTTCCATGAAACAAAGATGTCCAAACAGTAGCCACTGATGCAAAATCATATCATGAAAATTCAAGTTGAAGTCCCATTGAAAGCCAATATAATTCCAGCAAGCAGAACTGAAGTGGCAGCTGGAGAAGAGATGTTCCATAGTCTCCCTTTGCCCAGCTTGACAGGATTGACATAGGAGAGAAGCACTGGGAGGTTTGCAATGTTTCCTGTCAAGAAGATCCATTGTGTTCACTCTGCCCATAATGTTCTCTGGTTCTTATTTCTTCTCCTCTCACTGTTTTTGTCGGATTGTGGAGGGTGGACTACCACATGCATTGTAATTACACCTCCTGGAACTTCTACTCGAACACGGGACTCCACAAGTGTCCGGTTATTCTCCAATATCCTTCCGGCATTAATGAGCTTCAGGTCATTGACAGTTTTTGGAGTTATTTCCTTGTCTTGCGGCCACCGAGCGAGGATGAACTCCTTGAGCGCGGAGACGGTGGTGGAGAAGGCGGGGGCGCACGCCGGCGTGTGGAGGGGCCGCCAGGGACGCTACGGAGGCGTGGGCGCGACATGGAGGGGACGCGTAGTCGGTGCGTCGCGAAAGTGGCGGAGGCGGCGGGATGAGAGTGTG

Explanation	CPC Score
noncoding	-1.18161

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0115500.1	12	2033107	G	A
Osa12LNT0115500.1	12	2036423	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa12LNT0115500.1	DTM_#DNAt_MULE_japo_Os0230	Chr12	-	2039416	2039912	496

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0115500.1	osa-miR5544	Translation	3.5	17.63	1	22
Osa12LNT0115500.1	osa-miR5815	Cleavage	3.5	16.688	1	24
Osa12LNT0115500.1	osa-miR6245	Cleavage	4.5	12.695	1	21
Osa12LNT0115500.1	osa-miR5337b	Translation	5.0	14.375	1	21
Osa12LNT0115500.1	osa-miR171b	Translation	5.0	13.221	1	21
Osa12LNT0115500.1	osa-miR171c-3p	Translation	5.0	13.221	1	21
Osa12LNT0115500.1	osa-miR171d-3p	Translation	5.0	13.221	1	21
Osa12LNT0115500.1	osa-miR171e-3p	Translation	5.0	13.221	1	21
Osa12LNT0115500.1	osa-miR171f-3p	Translation	5.0	13.221	1	21
Osa12LNT0115500.1	osa-miR171h	Translation	5.0	14.688	1	21
Osa12LNT0115500.1	osa-miR810b.2	Translation	5.0	21.562	1	21
Osa12LNT0115500.1	osa-miR2868	Cleavage	5.0	15.67	1	20
Osa12LNT0115500.1	osa-miR2868	Cleavage	4.5	14.199	1	20
Osa12LNT0115500.1	osa-miR2863b	Translation	5.0	17.581	1	21
Osa12LNT0115500.1	osa-miR2878-5p	Translation	5.0	16.877	1	24
Osa12LNT0115500.1	osa-miR3981-5p	Translation	5.0	10.762	1	21
Osa12LNT0115500.1	osa-miR5161	Translation	4.0	20.225	1	20
Osa12LNT0115500.1	osa-miR5508	Translation	4.5	20.69	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0115500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115500.1	12	nan	Physiological trait	Eating quality	RM20	RM101
Osa12LNT0115500.1	12	Pi-4(t)	Resistance or Tolerance	Blast resistance	nan	nan
Osa12LNT0115500.1	12	gy12	Morphological trait	Seed	RG869	RG98

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus