>Osa12LNT0115800.1

CTCCGTGCATGAAAGTGACCTTGTCATCTTCCTCTTCCTCCATGCGGATCACCGATGGGAATCAATCCTCGTCACCATCCCAGCTCGGCCCATCACTCCCACTTGTCACCATCTTCAACTGCTGGGGATATCCAATTACCCTCATGCTTCGAGGAAGTTAGAATTCTTCATCAGTTTCTGCTGTCCTGGTAATAGGTAGTTTGTGCATCGGACAACACCTCTTCCTTTTGGGCCTTCATGCAAATCAATGACGGCATCACGATGATGCTGCCATCGTCTAGATAAAAAATTGGAAGTTTGGTTGAAATTGAAACGATGTGATGGAAAAGTTGAAAGTTTGTGTGTGTGAGAAAGTTTTGATGTGATGGAAAAGTTAGAAGTTTGAAGAAAAAGTTTGGAACTAAACCAGGCCTAAATACCCGGATGTCCTACAACCACTAGAGTTCTTTCTATTCAATTATCATCTGGCAACTCATTTAGCAAGGCTTGGTCTGCATCCTTTGACAGTTTGACTTCGCCCACAGTCCCACCAAGAGTCATGTATTCCATACTGCCCACCCAACCAGACAGCTATTTCTCCAAAG

Explanation	CPC Score
noncoding	-1.15026

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0115800.1	12	2398092	T	C
Osa12LNT0115800.1	12	2398132	T	C
Osa12LNT0115800.1	12	2398371	T	C
Osa12LNT0115800.1	12	2398602	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0115800.1	osa-miR5820	Cleavage	4.0	20.169	1	21
Osa12LNT0115800.1	osa-miR1857-5p	Cleavage	3.5	19.278	1	21
Osa12LNT0115800.1	osa-miR2097-5p	Translation	4.0	9.666	1	22
Osa12LNT0115800.1	osa-miR5147	Translation	4.5	15.453	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0115800.1	12	gy12	Morphological trait	Seed	RG869	RG98
Osa12LNT0115800.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115800.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115800.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0115800.1	12	nan	Physiological trait	Eating quality	RM20	RM101
Osa12LNT0115800.1	12	Pi-4(t)	Resistance or Tolerance	Blast resistance	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus