>Osa12LNT0118600.1

GTTTTATATTATAAGACTTTCTAGTATTGTCCACATTCATATATATGTTAATGAATCTAGATATATATGTGTGCGTCTAGAAGATCTATATAAATATGTGCAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGCAGTACTCTCTTAATTTTGTTGACACACGACACACTAAAAAAAACTCAAATAGTAGAAAATGAACACATTTCTGAAAATCACTGTAGATTATATTCATAGTGAAAATATCATTATACAATTGAATCGGCTTCATGCACATCCGCGCCATAGGGACTCGGGACGATCGGATCTGCACCCTAGGATCCCACAGCGCTGGATTTGGCCATCACCTTGCCCAGCGTCGCCTCGCAATCGTCTTTGCGTGCGATCGTCGTCATTGTGGACAGCGCTCTCCGCATGCACATGTGGACGACATTGGCAAGGAGTGTCATCGGCGGTGTGGGAGGAGGAGAGGCCGAGAAGAGATGGG

Explanation	CPC Score
noncoding	-1.2002

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0118600.1	12	4157226	G	A
Osa12LNT0118600.1	12	4157368	T	C
Osa12LNT0118600.1	12	4157206	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0118600.1	osa-miR2095-5p	Cleavage	4.0	11.654	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0118600.1	12	nan	Physiological trait	Eating quality	RM247	RM179
Osa12LNT0118600.1	12	Pi-4(t)	Resistance or Tolerance	Blast resistance	nan	nan
Osa12LNT0118600.1	12	gy12	Morphological trait	Seed	RG869	RG98
Osa12LNT0118600.1	12	rv12-2	Resistance or Tolerance	Drought tolerance	RM491	RM101
Osa12LNT0118600.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0118600.1	12	nan	Physiological trait	Eating quality	RM20	RM101
Osa12LNT0118600.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0118600.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0118600.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa12LNT0118600.1	osa-MIR11339	87.05	139	6	144	1.91e-37	152
Osa12LNT0118600.1	osa-MIR11343	86.822	129	6	131	3.6e-34	141

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus