\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0009700.1

AGCAAAAACTTAAAATCCCTTATATTATGATACGGAGGGAGTACATGATCACAGCCCTTATTGAGATTATAGAAGGCCAAGGCACTGCATCAGGTGTAACTACAAGCACTCTGGATAAACCTAATCGGCTTGGAGCTACCGGAATCGATAACCACCGGGCATTTCACACGCTTTGTGTGTGTCACCCTCACAAGCTTACCAATCACATACCCTCTAGCTCTTACCACCAAGTCTAGAGTCAGTGGCACAGCACCTCCAGCATTCGACAAGGCGAATGTTTCTCCAGCTCCATAGAGAGGGATCTTCTCGCCATGAACGATCGCCGAGGCGACATGATGGCTTGACCTTGGCTGGTAGAACTTCTCCAACTGACCGTTGGCGATCGCGATTTGCGAGAACAAGATCTGAATCGATGTCGAAGAGACATGAATGCCGAACATCGTGGAAGGGTTGTGAACATTTATCTGCAGAGAGCAGTTCATTGTCACCAGCTTTGTCGGCACCCCGGTCCGGTCTATACCTTCTCCGGCATAAAAGTTCCCCACTGTCAAGCTCTTGACAAGAACTCCAGGTTTGTAATGGCGAGCGATTCCCCAGACGATGAGGCAGACGAGGGTGAAGGCTAGAGCAAGAAGCGAGAATCGGAAGGCGAGGACGCAGCATCTGGATGGCTCATAGCCGCCATCGTCGTCGTCGTCAAACTCGTCGTACGCGCCTTCCTCCTCCTCGTCGATGATGGCGTCGACGTCGCGCCACCCCTTGGCGCCCAACCGCCTCCGGCCGCCGCCGCCACCAAGCCTGCTCCTCCCGGACGCCGACCGGAGGTTGCCGGAGAAGCGGCTGGCGGAGGAGACCCTGGAGTGGCGGCCGAAGGAGGAGGAGTGGTGCGACGGCGAGTCGAGCGGGCTGTTGTTGTACACCGGCGTGGCCTGCGTCGACGGCGACTTGTCGCCGTCGTCGTCGTGGGAGTCGCGCGACGGGCTGATCTGGACGTAGTACGCCGCCGCCGCCGCCTTGGGCGACCGCGACGGCGACGACGTCGCGAGGCTCGTCATGTCGGACTCCGACGTCGCCGGCTTCATCCTCCTTCGCAAAGCTTAGCTTCGCGGTCTGAATCCGATCGAGTTTAGCTCTTGCTGAAACTGAACCTAGTTTCAGAAAACAATCGGATTGAGAAGGAAGAGGAAGAGAAGATTTGGGAGTTGTCGGGCAGAAACCATCACTTTCCTCCCCCCCCCCCCCCCCCCCCGCACCGCTGTGATGATGGAAGTGGGGATTTTGGGAAGGCCGAAACGTACGGATCGAAACGAATGGGATTTGTGCGGTTGTGCCCCCTCGATCTCCGCCGCGCGAGAGGAACACGAGCGGAGAGCCAGAGAGGAAGAAAGGCCGGGGAAGAAGACGACGCTTTTGCCTCTTCTTCTTCTTCTTATTCTTCACCAGCGCCGGTAGCAGCCAAACCCTACCACTCGGAAGCGGCGGCGAGGGGAACAGACAGGAGCTAGCCAAGCCGAGTGAGCGAGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.988683
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0009700.1 1 7095865 A G
Osa01LNT0009700.1 1 7095894 G T
Osa01LNT0009700.1 1 7097661 A G
Osa01LNT0009700.1 1 7098332 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0009700.1 osa-miR5511 Translation 4.5 20.977 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0009700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0009700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0009700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0009700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0009700.1 1 gp1 Morphological trait Panicle/flower RG532 RM259
Osa01LNT0009700.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009700.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009700.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009700.1 1 nan Resistance or Tolerance Other soil stress tolerance C955 C885
Osa01LNT0009700.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0009700.1 1 nan Resistance or Tolerance Lodging resistance R1944 C955
Osa01LNT0009700.1 1 nan Morphological trait Root RM7383 RM243
Osa01LNT0009700.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0009700.1 1 Rf Physiological trait Sterility nan nan
Osa01LNT0009700.1 1 ppp1.1 Morphological trait Panicle/flower RG140 RM243
Osa01LNT0009700.1 1 prg1.2 Physiological trait Source activity RG140 RM243
Osa01LNT0009700.1 1 spp1.2 Morphological trait Panicle/flower RG140 RM243
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus