© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa12LNT0122100.1
GAAGATAAAACTTTGCCATGATAGTATGTTTTTACTTTTGGAAGTTCAGCCTTCATATTGCTGTAACCAAACAAGACTGCCATTACATTTCTTCTCACTTAAATTTAATACAATAGTATATAAGTCTCTTGGACTATTAAATTTTTGTCATCATTGCAATTAGTGGATAACCGAATCTGATTGAAACAGACCAATATCTAATCTGAATCTGTATCCATATCCACATTCAACAGATATCCGGTTCGTATTCGAATCCGGCTCAACTTATATGGTAATGGACATGTGGTTCAGTTATTATCCTGTTCAAATTTTCCTATTTACACCCCTGATCTGTCTATCTCTTTTGGAAGTTAAACCTTGAGATGCTGTACCCGTACAGGATGGCGAAGAGGACAGGGTATGCTGCCAATATTATGGCAGAAAGTGGTAGCAGCTCGCGGTGGAAACCAAAATAGTCTCTTACGAAGGCTGCGATCGGTTTAGTCTCTCCAAAGACAAGGATGTTGCTGTTGTCCTCGAATCCGAACTGTGTGGTGAAGAGGAGATTCAGCGTCCACGACATCGGGGAGATGTAGTACAGCCAGATCCACCATTTTGGTATTTGTGAAGGAGGCATGACGAAGCCAGAAAGGAGATGCTGTGTCATGTAGAACGAGGATGCATATATTGAGGCCACTTGGAGGTTGGGGGTGATTGATACTATCAGCATTCCAAAGTAGACGAAGTAGAGCAGCGTGCAGAACATGGTGTAAAAGAACCAGCAGAACTTCGCTGCTGTCCAGGCATACCCTATTGTCGGGTATGCGATCAACATGAACAACAATGCCAGCATCAAAACATAGGGAATCTCCATAGCAACCTGTGCAAAGGAGTAGGCCCAAGGAGAGTACATTCCAGCAAACCTTTCCCTGTACATGACAGAGCGTTCAACGGCGACAAATGGCATCGCTGATTGGCTGTTGTTAATACCAGTGAAGATGGTGATGCCATACATGCATCCCAAAATAGTGAACAGACCTTGTTGGTCATTTATGTGCCTGATGTTGCCTTGCTGCCAGTATAGCACACCGAAGATAATGCTAGAGAATGCCATGAACACAATTCGCACCAGGTTATATGAAGGAGTTCTCCAATGCGACAGGAACTGCTTCCAGAGGCAAGCTTTGAACTGCTCCAGAAACTTCTGCGGAAACCGTGTTGGGAAATGGAGATCGCTCGTACCTGGTGGTGGCATGCTGAAGCCCTTTATCAGCTCATCCTTGTCCTTGCGAATTGATGATCCCGTGTAAATTTGTGCAAAATCTACTCCAAGTTGAGCTTCCATGGATGTGGAAGTAACTTCTAGCATCCATGTTGATGGATTGTAGTTGTCCTTGATCTTGGGTACTCCTGGTATTGACTGAAAATATTGAATGACCTTGCACGAATGTTGTCCAAGTGGCCCGGCATAAATCAACTCTCCACCCCTTTTGATCAGCATTAACTCATCAAATGCTTCAAATATTTCGATACTTGGTTGATGAATTGTGCACACAACAGTTCGACCTGTTTCTGCCACATTCTTCACTGCACGCATGGCAATAGCAGCTGCTCTTGCATCCAAGCCTGATGTTGGTTCATCCATGAATACAATTGAAGGGTTAGACACGAGTTCAACTGCGATTGTGAGCCGTTTTCGTTGCTCTCTAGATAGACCATTTACCCCAGGTGTTCCAACCAAAGCATCTCTAATTTCGTCTAACTCAATTATTTCAAGAACTTCGTCAACAAATTCTTTTCTAGTTTTTGTGTCAATTTCTGCTGGAAGGCGTAGCCAGGCCGAATATGCTACAGACTCCCCCACTGTGATTTGTGGGGAGTGAACATCATTCTGTTCACAGTAGCCTGATATCCTAGAAAATGTTTGTTGAACTTTAGGATAACCACCTATTCTTATGTCTCCTTCAATAACACCCCCAGTTTTCCTTCCAGCAAGAACATCGAGGAGGGTTGTTTTCCCTGCTCCAGTAACACCCATTAGTGCAGACAGGATCCCAGGCTGGAATGCCCCTGTGATGTTCCGGAGCAGTTGTAGTTTTCTTCCCATGTAACCTTTCTTCCTCATTTCCGGAGGAGTGTCTACATAGTAGTTCACATCTTGAAATGATATAGTAAGGGGTGTGAAAGGTAATGCCATCCTCCTCGTCCCAATCTTGATGTCCTTTGACTTTTCTTGGTCTCTTCCATGACATATCCTTATCTTATCATTAGAAATAATAGCTTGAGAAGCCCCTGGAGATTGTTTTATAGTCAAACCAATGGCAAAACCGATATTGTATAACAAAATAAACCCAATCAATGCAGCAACTGAGATCCAATAAAAGTAGACAGAGAAGTCTAGCCCTCGATCTATCAGTATCCTCCTTCCAATTGTTACACCAGATATTGTGATCTTTAGCCATCTTGGTGCCAAAAACTCATTTCCAGTTAGGCCTATCTCAGCATATGACAATGGAGAGAGCCAAAACCCCCATTTTAGCCAATTAGGCATAGATGGCCGAGGAATGAGGAAACCGCCAAACAGAAGGATGACTAGAAGTGACATTGTGGCAGCAATTGGACCAACCGCTATTGTTTGGCAGTATGAACCAACACATCGATACAATGACAATGCTCCTGTGTGGACGAGGAAGAGGACGAGAAGCTGACGGAAATATCTGGGGGCTTCTGGAGTATATCCAATGAGGTAATAAGATATTGATGTCCAAGATAATGCCGCAACTAAAGAGGCTGGAATCTTTAGGATAAAAGCTGGTATTGCATAAGCCCATCCAGGATATAAGTAGTGATCTCTGTGTTTGTAAAAAACTGGAAGTCTGCTAATTGACATGACCAGCTCAGGGATTCCATTGACCATCAGCAGGATGAGTGCATAGAAGAGTGAACCCATGTAATAGTTGGCACTAACTATATCAAAATTCTTGTGTGTACGGAAAAACACTGTCCCAGTAATAATTGCAAGAAGTCCAAGCTGAACAGCTTTTGTTATGTGGAGGAAAGCATTCCTTTTCATGAGAAGAAGCTCTCTATCAAAACATGCCTTGAGGAGATGCCACTTGGACAATGAATAAATACTGCAGGACAAGGCATTCTTGTTTGCTTTTGATTTCTCATATAGCTTTGAAAGGTCCTCAGCTAGACTCTGACCAACTTGAGATGCTTTGAATTTATCACAGAACTGGTCGACAGTAATGAAATTGTACCATTGTTCACTTCGACTCCAGTACTGCTGTTGATCTTTTTTTGACAACACCTCTTGAAGAAAGTCAGCAGGTCCTTTTCTTTCTGGGCATTTGAACCCACATGACTCAAAGAAGGTCATTATGAGATTCTTTGGTCCATGATATACAACTTTTCCTTCTCCCATTATGATAATATCATCAAAAAGATCGTATGTCTCTGGTGCTGGTTGAAGGAGTGAAACCAGTATGGTATACTCTGAGATGTGTGCCAACTGTTGGAGGCAAGAAACAATTTGGAAGGTTGTGGAGCTATCCAACCCAGTTGATATTTCATCCATTAAGAGCACCTTACATGGTCCGACTATCATCTCCCCTGTGGTAAGTCTCTTCATCTCACCACCTGAAATACCTCTTCTCATGGCATTTCCCACTTTTACATCAGCACATTTGTCAAGTCCCATGATCTTCATAATATAGTCCGTTTGCATGCTCCTTTGTAGACCTTCCATAGATATTGCCTTCATATATGCATCTATGTCAGGATCAGGGGTAATCCCAGCCTCCTTCTCCCTTTTAATCACTGCCTTCATGATTTCTGCTCTGCTGCCAACGCCTTGAAATCTTGCTGAGAAGTCGAGCGTCTCCCTCACAGTCATATCAGCAACGTGAAGGTCATACTGACTTACATAAGCTGATGTCTTTGCTGGAACGAACTCATCTAGCTTCACACCATTGTACTCAATTTCTCCTGTTTCCTTGAGGCTTTTATTGAGCCTTCCAGCAAGTGCTTTCAAGAGTGTGGTTTTGCCGCACCCCGGGGGTCCAAGCAGAAGAGTAATCCTGGAAGGCTTGATGATTCCGCTGACATTTTCGAGGATCTGGACCTTGGACTGGTGATGGCTGAAGCCCAGCTTGGCCGCGAGCAGCGAGAATCTGGAGAGCGCGGCGTTCCAGAGCGTCGGGAGCGGCTTGCCGGAGACCACCTGGCATTCCGCCTCCACGCACACGTCGCGCCAACGCACCTCCACCGTCGCCGGCCGCACTCCCACCCTCTCCATCCTCTCCCGCTGCTTCCTGAGCATCCGGACATGGTCGTGTTTGACGTCGGCGACCAGCCGTTGCACCACCGCTCGCCGCTCCGCCGCACCCAGCCACCGCACGTCCACCACCTCCAACTCCGACGACGCTGCTCCTCCTCCGCCTCCCTCGCTCACATCGCCGCTGCTACCGCCGCCGCGAGTACTGGAGAGGAGAGACAACCGCAGCCGGTCGGCGGTGGGCAGCCTCTCGATCGCCGCCCACTTCCGCTTCAGCTCGTCGTCCTCCTTCTCGCGGCCGCCGCCACCGCCGCCGCCTCCTCCTCCCAGCTCGCCGGAGACGACGAGCTGCTGGTGGTGGTGGTGGTGCCCGTTCGCCGCCGTGACGCGGCAGCTGCTCCCCGCGGCTGCATCTTCGTCTTCCTCCTCCTCCGGCCATTGTGGAGGATCTACGCCGCCGCCGTTGGTCGTCGTCATGACCATCGATTTTTGTGGCGTTGCTTGTGTAGTGGTGTGCATATGCGGGTGTGTCACTCACAGGGTCAGTGTTGGTGATATACGATACTATGATATATATGCTGGGTATTTAAAACGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa12LNT0122100.1 | 12 | 7734961 | A | T |
| Osa12LNT0122100.1 | 12 | 7731959 | T | C |
| Osa12LNT0122100.1 | 12 | 7732071 | A | T |
| Osa12LNT0122100.1 | 12 | 7731480 | G | C |
| Osa12LNT0122100.1 | 12 | 7733238 | G | T |
| Osa12LNT0122100.1 | 12 | 7733318 | T | A |
| Osa12LNT0122100.1 | 12 | 7733328 | A | G |
| Osa12LNT0122100.1 | 12 | 7733569 | A | G |
| Osa12LNT0122100.1 | 12 | 7733598 | T | G |
| Osa12LNT0122100.1 | 12 | 7733743 | G | C |
| Osa12LNT0122100.1 | 12 | 7733862 | T | C |
| Osa12LNT0122100.1 | 12 | 7734284 | A | G |
| Osa12LNT0122100.1 | 12 | 7734293 | T | C |
| Osa12LNT0122100.1 | 12 | 7734389 | C | T |
| Osa12LNT0122100.1 | 12 | 7736520 | T | A |
| Osa12LNT0122100.1 | 12 | 7736593 | T | C |
| Osa12LNT0122100.1 | 12 | 7736701 | C | T |
| Osa12LNT0122100.1 | 12 | 7737022 | A | G |
| Osa12LNT0122100.1 | 12 | 7737153 | A | T |
| Osa12LNT0122100.1 | 12 | 7737298 | T | C |
| Osa12LNT0122100.1 | 12 | 7737345 | C | T |
| Osa12LNT0122100.1 | 12 | 7737474 | C | T |
| Osa12LNT0122100.1 | 12 | 7737588 | G | A |
| Osa12LNT0122100.1 | 12 | 7737589 | C | T |
| Osa12LNT0122100.1 | 12 | 7737889 | A | G |
| Osa12LNT0122100.1 | 12 | 7737940 | G | A |
| Osa12LNT0122100.1 | 12 | 7738739 | G | A |
| Osa12LNT0122100.1 | 12 | 7733209 | C | A |
| Osa12LNT0122100.1 | 12 | 7734106 | T | C |
| Osa12LNT0122100.1 | 12 | 7738750 | C | T |
| Osa12LNT0122100.1 | 12 | 7738935 | T | C |
| Osa12LNT0122100.1 | 12 | 7738971 | G | A |
| Osa12LNT0122100.1 | 12 | 7739039 | A | C |
| Osa12LNT0122100.1 | 12 | 7739091 | G | T |
| Osa12LNT0122100.1 | 12 | 7739432 | A | G |
| Osa12LNT0122100.1 | 12 | 7739725 | C | T |
| Osa12LNT0122100.1 | 12 | 7740160 | A | G |
| Osa12LNT0122100.1 | 12 | 7740420 | A | T |
| Osa12LNT0122100.1 | 12 | 7740634 | A | G |
| Osa12LNT0122100.1 | 12 | 7741400 | G | A |
| Osa12LNT0122100.1 | 12 | 7741481 | C | T |
| Osa12LNT0122100.1 | 12 | 7741632 | T | G |
| Osa12LNT0122100.1 | 12 | 7741869 | C | A |
| Osa12LNT0122100.1 | 12 | 7742108 | C | T |
| Osa12LNT0122100.1 | 12 | 7742319 | A | G |
| Osa12LNT0122100.1 | 12 | 7742374 | A | C |
| Osa12LNT0122100.1 | 12 | 7742458 | T | C |
| Osa12LNT0122100.1 | 12 | 7742864 | A | G |
| Osa12LNT0122100.1 | 12 | 7743769 | C | T |
| Osa12LNT0122100.1 | 12 | 7743811 | A | G |
| Osa12LNT0122100.1 | 12 | 7743833 | C | G |
| Osa12LNT0122100.1 | 12 | 7743834 | G | A |
| Osa12LNT0122100.1 | 12 | 7744032 | T | A |
| Osa12LNT0122100.1 | 12 | 7745089 | G | C |
| Osa12LNT0122100.1 | 12 | 7745260 | A | T |
| Osa12LNT0122100.1 | 12 | 7745273 | T | C |
| Osa12LNT0122100.1 | 12 | 7745381 | C | A |
| Osa12LNT0122100.1 | 12 | 7745450 | G | A |
| Osa12LNT0122100.1 | 12 | 7745566 | T | C |
| Osa12LNT0122100.1 | 12 | 7745721 | T | C |
| Osa12LNT0122100.1 | 12 | 7745787 | C | T |
| Osa12LNT0122100.1 | 12 | 7746882 | A | G |
| Osa12LNT0122100.1 | 12 | 7746891 | C | T |
| Osa12LNT0122100.1 | 12 | 7746898 | A | G |
| Osa12LNT0122100.1 | 12 | 7746960 | T | C |
| Osa12LNT0122100.1 | 12 | 7747409 | G | T |
| Osa12LNT0122100.1 | 12 | 7747520 | A | C |
| Osa12LNT0122100.1 | 12 | 7747755 | G | T |
| Osa12LNT0122100.1 | 12 | 7747770 | T | C |
| Osa12LNT0122100.1 | 12 | 7747788 | T | C |
| Osa12LNT0122100.1 | 12 | 7747845 | G | A |
| Osa12LNT0122100.1 | 12 | 7749174 | A | G |
| Osa12LNT0122100.1 | 12 | 7749176 | T | C |
| Osa12LNT0122100.1 | 12 | 7749205 | C | T |
| Osa12LNT0122100.1 | 12 | 7741092 | T | C |
| Osa12LNT0122100.1 | 12 | 7733519 | C | T |
| Osa12LNT0122100.1 | 12 | 7740347 | T | G |
| Osa12LNT0122100.1 | 12 | 7740881 | A | T |
| Osa12LNT0122100.1 | 12 | 7734505 | A | G |
| Osa12LNT0122100.1 | 12 | 7744612 | G | C |
| Osa12LNT0122100.1 | 12 | 7744658 | T | C |
| Osa12LNT0122100.1 | 12 | 7744722 | T | C |
| Osa12LNT0122100.1 | 12 | 7744663 | T | C |
| Osa12LNT0122100.1 | 12 | 7744732 | T | C |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa12LNT0122100.1 | DTM_#DNAt_MULE_japo_Os0053 | Chr12 | - | 7744205 | 7745008 | 803 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa12LNT0122100.1 | osa-miR5541 | Cleavage | 4.5 | 21.622 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5541 | Cleavage | 5.0 | 12.429 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5820 | Translation | 4.5 | 15.507 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR169a | Cleavage | 4.5 | 15.299 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR169n | Cleavage | 4.5 | 15.299 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR169o | Cleavage | 4.5 | 15.299 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR171c-5p | Translation | 3.5 | 14.443 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR171f-5p | Translation | 4.0 | 14.219 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR171i-5p | Translation | 4.5 | 14.443 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR435 | Cleavage | 5.0 | 10.774 | 1 | 20 |
| Osa12LNT0122100.1 | osa-miR395v | Translation | 4.0 | 16.682 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR1429-3p | Cleavage | 5.0 | 11.925 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR1429-3p | Cleavage | 4.5 | 16.717 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR1852 | Cleavage | 4.5 | 12.097 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR1319a | Translation | 5.0 | 11.443 | 1 | 24 |
| Osa12LNT0122100.1 | osa-miR1319a | Translation | 4.5 | 17.48 | 1 | 24 |
| Osa12LNT0122100.1 | osa-miR395x | Cleavage | 5.0 | 8.44 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5152-5p | Cleavage | 4.0 | 14.867 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5489 | Translation | 5.0 | 16.388 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5519 | Cleavage | 4.5 | 16.952 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5820 | Cleavage | 5.0 | 15.448 | 1 | 21 |
| Osa12LNT0122100.1 | osa-miR5489 | Translation | 4.5 | 23.891 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa12LNT0122100.1 | 12 | rv12-2 | Resistance or Tolerance | Drought tolerance | RM491 | RM101 |
| Osa12LNT0122100.1 | 12 | RG869 | Resistance or Tolerance | Other disease resistance | nan | nan |
| Osa12LNT0122100.1 | 12 | qDLA-12-3 | Resistance or Tolerance | Blast resistance | RG463 | RZ816 |
| Osa12LNT0122100.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0122100.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0122100.1 | 12 | nan | Resistance or Tolerance | Other soil stress tolerance | RG9 | RG241 |
| Osa12LNT0122100.1 | 12 | nan | Morphological trait | Seed | RG543 | RG81 |
| Osa12LNT0122100.1 | 12 | nan | Physiological trait | Eating quality | RM20 | RM101 |
| Osa12LNT0122100.1 | 12 | nan | Physiological trait | Eating quality | RM247 | RM179 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)