>Osa12LNT0123200.3

ATTATCACATCCGCAATTGTATATAATTTCTCTATCACCATCAATTCATATCCATAATTATGGGATGGAAGGTTCCAGTTGTACAACCTACAAAATGCACAAATGGTTCATGAAGTATTTCATGTAATATAAATGAGCATTTAGATATGTGGAATCTGATATGGAACCTTTGGTGGCTATAACTTAACTGACCAAGTGAACTTCACCTCAAAATCAGATGCAAAATAAGAACAATATAATGGTGTGTGCCAAATTCACTTGAGTTTCTAGTTTCAAAAAATCAATTCGTCCTTACAAAGCAAACCAAACCTCTGACTGCACAGGATCTACAGAGCAACAGATCACAGCTCCAAAGTATATTGACCTGCCTGCAACCTTGTGGCTCCACGCATTCAGCTCTTTTGGAGTAACTGGCACTCAATGTATGAAATTTCAGCATGGAAAGGAACTGAAAGGTTCATTTTTCTTTCGAAGAACAAATAAAAAATGTAATGTCAATCACCAAAGAAAATTGTGTAGAAAGTGAAAGAGTATAGCAATTAGCCCACTTAGCAGTTTGTACTGATTTCAAGTTCTACTGGAGCAAATTGCAGTGTCCCTAAGCAGAGCATGATGGGTGTAGGAATCTTGGTAGATATTTGCATAGGCCATATCATTAATCTCCGACCTCTAACCATTATGTGTTCAATTCATGGAAAGAGGATTTTGTGCCATAGCTCACCACAACACGTTTCAGATCCAATCTATAGTATTTATATATTACCAAACATGTTCTTAATTTCATCATTGTAACAGAAACTTCCACACAATTTCTTCACCAATTGCTATAGGAGCACTAAATATATATCAGTTTAAATCAGCATGGCTTAGCCCTAAATTAGTAGAGTTCATTCTGCATCTTCAAAGACTACCAATGCTGACTTGCATCAGCACCACAGTGAATCATCCAATTACTTAGCCACACCTTCAAGTGCTTGTAATGATCTCACCGAGCCCAACAACCTAAATGCTATTGGTTGGTCTAGTCCAAAAACCTCACCAGAAGCATCACAAGTCCAAAAACGTACTTCTATTAGTAAATGTTGAGCTTCTCTGAAGGTTTTTGTTCTAACACAATCTGCCACATAACTTCAATTCTGATGTTAAGGAGCAGAAATAGAGCCTGAATTCTCGATTTGCACTGATCTCAGTTCTCTACTGTACTAAAATAAAGAATCCCTCAGCAGAGCAGGATAGATTCATAGATTCCTTGTAGTCTTGCAGACATTTACATAGGCCATAGCACTACTTGTAAGAGGCATGCAAAATATCATACCTCCGACCACTGTAATAAGCAATTTGAGATAGTGGCTGAGATGATGGCGAGCAATCATATCAGAACATGCAGTGAAGGTTTCGTTAAATATGATCGTCATTTAGAAAAAGAGTTCAAGGTGAACCATTGTGGAACTAAAATATCACCTAGTAAAATTGAAGTGGAAGTAGGAAAAGGCAAAAAAAAAAAAGGTTCCCAAAATACCTATACATATGGATTCTCAATTAATGATGAAGTTGCATACATCCATTGCCCCTAAGTAAATTACACCATAAATAACAATGGCAAGGCAATTGCAAATGGCCCTTGGCTAGGCGACGACAGATGGTTCCCAGATTACCTGTTGCTGGCCAGATCTGCAATTGCGAAACAGTGTCGGCGCCGCACGGCAGCGGAGCTTCAAACTTGAGCAGAAGGGCGCCAACCCACTGTGGAGATGGAGAAGGATTGCATCGGCTTCATGGCGAACTTGAGTGCATGTACCCACCGGATCTAGCGATAGGCCAGCAGATCGATCACCTCGTTGTCGTTCTCCATCACCAGCAGCCCTGGTTGATCTCCATCACCACCACCCCTACTTGAACGGATCGAGTGGCAGGGCCAGCAGATCGACCCTCTCGCCCTCGTTCTGCATCATGACCACTCTCCCTGCTTAACTGGGAAGAGAGATGGAGAGATTGGGCAGGGGGAGGGCGACGAAGCGACGACAGGCGTCACGGCCAAACCTCGCCCCGAGCCCCACGTGGTCTGGTCCCTCCGCAGGTTCACCACGGCGTCGACGATTCACCAACGACCACAGCAGCGCCTGGACGAAGGAGAACGCGCAGAGGAGTTTGTGAGGAGGCGGCGACTTCGGTGCGGCTAGGGTTTTTGGATGGCAGTAGAGGGCAGCCAAAAGTTAACTCCCCCGTCCACCCTCGCGTGATGGACGGCAAAAAAGCTCGAGGGGCAAGCCGTCGTCGCCGGCGAGGAGAAGGCAAAGCGGCGGCGGCGCAAGGGCAAGGGAAAGGAAGAGAAGGGAT

Explanation	CPC Score
noncoding	-1.13069

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0123200.3	12	9514434	A	T
Osa12LNT0123200.3	12	9517403	T	C
Osa12LNT0123200.3	12	9517454	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0123200.3	osa-miR5537	Cleavage	5.0	14.832	1	22
Osa12LNT0123200.3	osa-miR5813	Translation	4.5	19.512	1	22
Osa12LNT0123200.3	osa-miR167h-3p	Translation	4.5	16.356	1	21
Osa12LNT0123200.3	osa-miR1870-3p	Cleavage	4.5	12.025	1	24
Osa12LNT0123200.3	osa-miR1879	Cleavage	4.5	10.673	1	24
Osa12LNT0123200.3	osa-miR5157a-3p	Cleavage	4.5	17.706	1	24
Osa12LNT0123200.3	osa-miR5157b-3p	Cleavage	4.5	17.706	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0123200.3	12	Spl1	Others	Others	nan	nan
Osa12LNT0123200.3	12	nan	Physiological trait	Eating quality	RM247	RM179
Osa12LNT0123200.3	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0123200.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0123200.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0123200.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0123200.3	12	nan	Morphological trait	Seed	RG543	RG81

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus