>Osa01LNT0000400.1

AGCTAGATTGGGTGAAATCAGTTGTGAAATCTTGGCTACCAAAAGCCATCCGCTGAAACAGCCTGATTTCTGCCGTGTTTGCCACATTGAACATTTCGCTCTTACCAGGCTGAATACCATTGCTTAGATCGACGTCAGCTAAGCTATCAAGAACACGCACCACCTGGCTCATCCGGGGTCTCCTAGATGCTGAATGTCGAATGCAAGCTGCCGCAGCTTCGATCATTCGAAACATTTCAGCTTCATTGAAGTTCTTGTCCAGCCTGGAGTCAATCAGCTCCCCAACGTTGCCAGTCTCAATTGCTTCTGTGAGCAATGGCCTAGCCTGCAAGTGATTGTGTAAGTTACACAAGGATCCCCTCTTTAGACTGATTTACAACACGATTTCAGCAGATGTTCATAGTTGACCAGTCCACATTTTATATCAGAACGCTTTTCAACCAGTGGCTAACTATATGGATTGACTCCTAATAAAAACACAGTTAAAAAATGTGAACTGCAGAGATCAACAGCTCAATGTGAATTCCTACGTTATTAGAATCTTTGAAATGAGTCAAGTTGGCTATTCAAATACAGTTGATAAAATATATTTCTCCATTTGCTTTCATTTGATCATACAGGGGCAAAAATCTTATTGAACATACTAATTTCAATATACTCATCTTCCATTATCTAAAAAAAAATGATTTCTAGTTACTGATATAGCTTACCCACTCAACAAGGCTCTCATCACCCAATGGTTTTGATGCGTCAACAGGCTTTCTACCGGTAATAAGCTCTAAGAGAACAACGCCAAAAGAGAATACATCAGATCTCTCAGTCAACTTGCCACTCGAAGCATACTCCGGAGCCAGATAACTG

Explanation	CPC Score
noncoding	-1.13533

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0000400.1	1	555271	T	C
Osa01LNT0000400.1	1	554579	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0000400.1	osa-miR5829	Translation	4.0	13.386	1	24
Osa01LNT0000400.1	osa-miR1863c	Translation	5.0	13.724	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0000400.1	1	n+p1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0000400.1	1	n+s1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0000400.1	1	Gc	Others	Others	nan	nan
Osa01LNT0000400.1	1	yd1a	Morphological trait	Seed	R753	C161
Osa01LNT0000400.1	1	nan	Physiological trait	Eating quality	C161	R753
Osa01LNT0000400.1	1	nan	Physiological trait	Eating quality	C161	R753

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus